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dbVar

Database of genomic structural variation

nsv4370561

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:88,820

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 360 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):21,212,780-21,301,599

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4370561	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	21,212,780	21,301,599
nsv4370561	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	21,254,272	21,343,091

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15628885	copy number gain	1-0559-003	SNP array	Genotyping	28
nssv15666554	copy number gain	7-0102-003	SNP array	Genotyping	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15628885	Remapped	Perfect	NC_000003.12:g.(?_ 21212780)_(2130159 9_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	21,212,780	21,301,599
nssv15666554	Remapped	Perfect	NC_000003.12:g.(?_ 21212780)_(2130159 9_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	21,212,780	21,301,599
nssv15628885	Submitted genomic		NC_000003.11:g.(?_ 21254272)_(2134309 1_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	21,254,272	21,343,091
nssv15666554	Submitted genomic		NC_000003.11:g.(?_ 21254272)_(2134309 1_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	21,254,272	21,343,091

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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