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dbVar

Database of genomic structural variation

nsv4370586

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:30,869

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 544 SVs from 66 studies. See in: genome view

Remapped(Score: Perfect):3,761,227-3,792,095

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4370586	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	3,761,227	3,792,095
nsv4370586	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000008.10	Chr8	3,618,749	3,649,617

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15645298	copy number loss	2-0129-002	SNP array	Genotyping	19
nssv15645318	copy number loss	2-0129-004	SNP array	Genotyping	21
nssv15645332	copy number loss	2-0129-005	SNP array	Genotyping	16

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15645298	Remapped	Perfect	NC_000008.11:g.(?_ 3761227)_(3792095_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,761,227	3,792,095
nssv15645318	Remapped	Perfect	NC_000008.11:g.(?_ 3761227)_(3792095_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,761,227	3,792,095
nssv15645332	Remapped	Perfect	NC_000008.11:g.(?_ 3761227)_(3792095_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,761,227	3,792,095
nssv15645298	Submitted genomic		NC_000008.10:g.(?_ 3618749)_(3649617_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,618,749	3,649,617
nssv15645318	Submitted genomic		NC_000008.10:g.(?_ 3618749)_(3649617_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,618,749	3,649,617
nssv15645332	Submitted genomic		NC_000008.10:g.(?_ 3618749)_(3649617_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,618,749	3,649,617

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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