nsv4370796

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:34
Validation:Not tested
Clinical Assertions: No
Region Size:55,500

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 709 SVs from 78 studies. See in: genome view

Remapped(Score: Perfect):180,948,290-181,003,789

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4370796	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nsv4370796	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	180,375,290	180,430,789

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15619445	copy number gain	1-0922-003	SNP array	Genotyping	16
nssv15620660	copy number gain	1-0976-004	SNP array	Genotyping	21
nssv15620795	copy number gain	1-0957-003	SNP array	Genotyping	20
nssv15627602	copy number gain	1-0004-004	SNP array	Genotyping	20
nssv15629260	copy number gain	1-0574-004	SNP array	Genotyping	19
nssv15629685	copy number gain	1-0568-002	SNP array	Genotyping	20
nssv15633220	copy number gain	11-0013-003	SNP array	Genotyping	24
nssv15634445	copy number gain	11-0041-003	SNP array	Genotyping	19
nssv15640638	copy number gain	14-0344-003	SNP array	Genotyping	33
nssv15648234	copy number gain	2-1235-004	SNP array	Genotyping	19
nssv15651287	copy number gain	2-1370-002	SNP array	Genotyping	14
nssv15662486	copy number gain	5-0049-003	SNP array	Genotyping	27
nssv15665558	copy number gain	7-0107-001	SNP array	Genotyping	18
nssv15668021	copy number gain	7-0163-003	SNP array	Genotyping	16
nssv15670049	copy number gain	7-0254-004	SNP array	Genotyping	17
nssv15670738	copy number gain	7-0242-003	SNP array	Genotyping	18
nssv15672610	copy number gain	9-0011-002	SNP array	Genotyping	18
nssv15674809	copy number gain	206771	SNP array	Genotyping	18
nssv15675071	copy number gain	217292	SNP array	Genotyping	27
nssv15675777	copy number gain	172011	SNP array	Genotyping	19
nssv15679261	copy number gain	205647	SNP array	Genotyping	22
nssv15683282	copy number gain	OCD1008-0625-6107-3	SNP array	Genotyping	17
nssv15685708	copy number gain	OCD17-S_896322	SNP array	Genotyping	23
nssv15685744	copy number gain	OCD170-DJ-375_1808	SNP array	Genotyping	17
nssv15686288	copy number gain	OCD3-S_896083	SNP array	Genotyping	27
nssv15686873	copy number gain	OCD35-S_0555-6300-2	SNP array	Genotyping	18
nssv15687488	copy number gain	OCD162-896231	SNP array	Genotyping	9
nssv15690847	copy number gain	OCD170-RM-1810	SNP array	Genotyping	18
nssv15693917	copy number gain	OCD97-1398	SNP array	Genotyping	19
nssv15694050	copy number gain	209719	SNP array	Genotyping	15
nssv15695035	copy number gain	187365	SNP array	Genotyping	11
nssv15699268	copy number gain	224902	SNP array	Genotyping	16
nssv15700749	copy number gain	158445	SNP array	Genotyping	23
nssv15701618	copy number gain	223693	SNP array	Genotyping	8

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15619445	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15620660	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15620795	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15627602	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15629260	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15629685	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15633220	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15634445	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15640638	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15648234	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15651287	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15662486	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15665558	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15668021	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15670049	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15670738	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15672610	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15674809	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15675071	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15675777	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15679261	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15683282	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15685708	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15685744	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15686288	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15686873	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15687488	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15690847	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15693917	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15694050	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15695035	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15699268	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15700749	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15701618	Remapped	Perfect	NC_000005.10:g.(?_ 180948290)_(181003 789_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,290	181,003,789
nssv15619445	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15620660	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15620795	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15627602	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15629260	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15629685	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15633220	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15634445	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15640638	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15648234	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15651287	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15662486	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15665558	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15668021	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15670049	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15670738	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15672610	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15674809	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15675071	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15675777	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15679261	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15683282	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15685708	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15685744	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15686288	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15686873	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15687488	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15690847	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15693917	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15694050	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15695035	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15699268	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15700749	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789
nssv15701618	Submitted genomic		NC_000005.9:g.(?_1 80375290)_(1804307 89_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,290	180,430,789

dbVar

Database of genomic structural variation

nsv4370796

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant