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dbVar

Database of genomic structural variation

nsv4371021

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:20,415

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 597 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):15,545,347-15,565,761

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4371021	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nsv4371021	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000008.10	Chr8	15,402,856	15,423,270

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15661873	copy number loss	4-0042-003	SNP array	Genotyping	15
nssv15665846	copy number loss	7-0099-003	SNP array	Genotyping	17
nssv15666797	copy number loss	7-0111-003	SNP array	Genotyping	23
nssv15668465	copy number loss	7-0222-003	SNP array	Genotyping	25
nssv15676013	copy number loss	246958	SNP array	Genotyping	19
nssv15685682	copy number loss	OCD169-8961252	SNP array	Genotyping	26
nssv15692296	copy number loss	OCD69-896073	SNP array	Genotyping	26
nssv15698724	copy number loss	238656	SNP array	Genotyping	19
nssv15701995	copy number loss	199597	SNP array	Genotyping	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15661873	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15665846	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15666797	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15668465	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15676013	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15685682	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15692296	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15698724	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15701995	Remapped	Perfect	NC_000008.11:g.(?_ 15545347)_(1556576 1_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	15,545,347	15,565,761
nssv15661873	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270
nssv15665846	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270
nssv15666797	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270
nssv15668465	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270
nssv15676013	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270
nssv15685682	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270
nssv15692296	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270
nssv15698724	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270
nssv15701995	Submitted genomic		NC_000008.10:g.(?_ 15402856)_(1542327 0_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	15,402,856	15,423,270

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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