nsv4371422
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:21
- Validation:Not tested
- Clinical Assertions: No
- Region Size:129,719
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1780 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 1780 SVs from 97 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4371422 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nsv4371422 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15615356 | copy number loss | 1-0769-003 | SNP array | Genotyping | 24 |
| nssv15615880 | copy number loss | 1-0789-003 | SNP array | Genotyping | 18 |
| nssv15617566 | copy number loss | 1-0829-003 | SNP array | Genotyping | 22 |
| nssv15618538 | copy number loss | 1-0901-004 | SNP array | Genotyping | 19 |
| nssv15621042 | copy number loss | 1-0981-003 | SNP array | Genotyping | 24 |
| nssv15622788 | copy number loss | 1-0025-004 | SNP array | Genotyping | 30 |
| nssv15630315 | copy number loss | 1-0609-001 | SNP array | Genotyping | 24 |
| nssv15640153 | copy number loss | 14-0119-001 | SNP array | Genotyping | 20 |
| nssv15642988 | copy number loss | 15-1131-002 | SNP array | Genotyping | 21 |
| nssv15652199 | copy number loss | 2-1523-003 | SNP array | Genotyping | 24 |
| nssv15666626 | copy number loss | 7-0125-003 | SNP array | Genotyping | 25 |
| nssv15667272 | copy number loss | 7-0155-003 | SNP array | Genotyping | 22 |
| nssv15673386 | copy number loss | 9-0039-002 | SNP array | Genotyping | 30 |
| nssv15677412 | copy number loss | 159772 | SNP array | Genotyping | 18 |
| nssv15681152 | copy number loss | 193294 | SNP array | Genotyping | 26 |
| nssv15681547 | copy number loss | 227580 | SNP array | Genotyping | 22 |
| nssv15682305 | copy number loss | OCD11-S_896191 | SNP array | Genotyping | 16 |
| nssv15689257 | copy number loss | OCD1-B_LA-1326 | SNP array | Genotyping | 15 |
| nssv15696049 | copy number loss | 153030 | SNP array | Genotyping | 19 |
| nssv15696367 | copy number loss | 158189 | SNP array | Genotyping | 26 |
| nssv15698350 | copy number loss | 156229 | SNP array | Genotyping | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15615356 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15615880 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15617566 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15618538 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15621042 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15622788 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15630315 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15640153 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15642988 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15652199 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15666626 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15667272 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15673386 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15677412 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15681152 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15681547 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15682305 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15689257 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15696049 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15696367 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15698350 | Remapped | Perfect | NC_000003.12:g.(?_ 162803521)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,803,521 | 162,933,239 |
| nssv15615356 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15615880 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15617566 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15618538 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15621042 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15622788 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15630315 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15640153 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15642988 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15652199 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15666626 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15667272 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15673386 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15677412 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15681152 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15681547 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15682305 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15689257 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15696049 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15696367 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 | ||
| nssv15698350 | Submitted genomic | NC_000003.11:g.(?_ 162521309)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,521,309 | 162,651,027 |