nsv4371560
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:26
- Validation:Not tested
- Clinical Assertions: No
- Region Size:158,039
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1715 SVs from 99 studies. See in: genome view
Overlapping variant regions from other studies: 1720 SVs from 99 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4371560 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nsv4371560 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15611806 | copy number loss | 1-0656-001 | SNP array | Genotyping | 18 |
| nssv15613956 | copy number loss | 1-0710-003 | SNP array | Genotyping | 22 |
| nssv15615056 | copy number loss | 1-0738-003 | SNP array | Genotyping | 28 |
| nssv15620910 | copy number loss | 1-0966-003 | SNP array | Genotyping | 28 |
| nssv15622762 | copy number loss | 1-1036-003 | SNP array | Genotyping | 21 |
| nssv15623252 | copy number loss | 1-0228-004 | SNP array | Genotyping | 18 |
| nssv15630610 | copy number loss | 1-0598-003 | SNP array | Genotyping | 17 |
| nssv15631530 | copy number loss | 1-0636-003 | SNP array | Genotyping | 23 |
| nssv15633903 | copy number loss | 10-1155-002 | SNP array | Genotyping | 23 |
| nssv15637324 | copy number loss | 13-0094-001 | SNP array | Genotyping | 17 |
| nssv15637341 | copy number loss | 13-0094-002 | SNP array | Genotyping | 19 |
| nssv15638543 | copy number loss | 14-0144-002 | SNP array | Genotyping | 23 |
| nssv15638660 | copy number loss | 14-0010-001 | SNP array | Genotyping | 14 |
| nssv15638675 | copy number loss | 14-0010-002 | SNP array | Genotyping | 20 |
| nssv15638707 | copy number loss | 14-0010-004 | SNP array | Genotyping | 15 |
| nssv15639286 | copy number loss | 14-0284-004 | SNP array | Genotyping | 28 |
| nssv15643071 | copy number loss | 14-0325-002 | SNP array | Genotyping | 26 |
| nssv15652685 | copy number loss | 2-1508-001 | SNP array | Genotyping | 18 |
| nssv15655470 | copy number loss | 3-0119-000 | SNP array | Genotyping | 20 |
| nssv15659117 | copy number loss | 4-0065-001 | SNP array | Genotyping | 19 |
| nssv15670310 | copy number loss | 7-0292-004 | SNP array | Genotyping | 13 |
| nssv15670915 | copy number loss | 7-0286-003 | SNP array | Genotyping | 20 |
| nssv15675660 | copy number loss | 9-0045-002 | SNP array | Genotyping | 22 |
| nssv15687239 | copy number loss | OCD4-S_896091 | SNP array | Genotyping | 23 |
| nssv15697810 | copy number loss | 187370 | SNP array | Genotyping | 20 |
| nssv15702939 | copy number loss | 237508 | SNP array | Genotyping | 39 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15611806 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15613956 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15615056 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15620910 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15622762 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15623252 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15630610 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15631530 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15633903 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15637324 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15637341 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15638543 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15638660 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15638675 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15638707 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15639286 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15643071 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15652685 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15655470 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15659117 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15670310 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15670915 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15675660 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15687239 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15697810 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15702939 | Remapped | Perfect | NC_000001.11:g.(?_ 248473950)_(248631 988_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 248,473,950 | 248,631,988 |
| nssv15611806 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15613956 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15615056 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15620910 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15622762 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15623252 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15630610 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15631530 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15633903 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15637324 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15637341 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15638543 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15638660 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15638675 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15638707 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15639286 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15643071 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15652685 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15655470 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15659117 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15670310 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15670915 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15675660 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15687239 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15697810 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 | ||
| nssv15702939 | Submitted genomic | NC_000001.10:g.(?_ 248637251)_(248795 289_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 248,637,251 | 248,795,289 |