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dbVar

Database of genomic structural variation

nsv4371597

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:30,284

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 293 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):118,491,626-118,521,909

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4371597	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	118,491,626	118,521,909
nsv4371597	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000007.13	Chr7	118,131,680	118,161,963

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15613228	copy number loss	1-0679-003	SNP array	Genotyping	21
nssv15617403	copy number loss	1-0843-003	SNP array	Genotyping	27
nssv15641099	copy number loss	14-0382-004	SNP array	Genotyping	29
nssv15641851	copy number loss	14-0277-002	SNP array	Genotyping	19
nssv15642173	copy number loss	16-1001-004	SNP array	Genotyping	36
nssv15644760	copy number loss	16-1001-003	SNP array	Genotyping	29

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15613228	Remapped	Perfect	NC_000007.14:g.(?_ 118491626)_(118521 909_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	118,491,626	118,521,909
nssv15617403	Remapped	Perfect	NC_000007.14:g.(?_ 118491626)_(118521 909_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	118,491,626	118,521,909
nssv15641099	Remapped	Perfect	NC_000007.14:g.(?_ 118491626)_(118521 909_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	118,491,626	118,521,909
nssv15641851	Remapped	Perfect	NC_000007.14:g.(?_ 118491626)_(118521 909_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	118,491,626	118,521,909
nssv15642173	Remapped	Perfect	NC_000007.14:g.(?_ 118491626)_(118521 909_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	118,491,626	118,521,909
nssv15644760	Remapped	Perfect	NC_000007.14:g.(?_ 118491626)_(118521 909_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	118,491,626	118,521,909
nssv15613228	Submitted genomic		NC_000007.13:g.(?_ 118131680)_(118161 963_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	118,131,680	118,161,963
nssv15617403	Submitted genomic		NC_000007.13:g.(?_ 118131680)_(118161 963_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	118,131,680	118,161,963
nssv15641099	Submitted genomic		NC_000007.13:g.(?_ 118131680)_(118161 963_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	118,131,680	118,161,963
nssv15641851	Submitted genomic		NC_000007.13:g.(?_ 118131680)_(118161 963_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	118,131,680	118,161,963
nssv15642173	Submitted genomic		NC_000007.13:g.(?_ 118131680)_(118161 963_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	118,131,680	118,161,963
nssv15644760	Submitted genomic		NC_000007.13:g.(?_ 118131680)_(118161 963_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	118,131,680	118,161,963

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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