nsv4371731

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:44
Validation:Not tested
Clinical Assertions: No
Region Size:32,682

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1021 SVs from 85 studies. See in: genome view

Remapped(Score: Perfect):40,846,784-40,879,465

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4371731	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nsv4371731	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	41,352,689	41,385,370

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15616102	copy number loss	1-0782-004	SNP array	Genotyping	15
nssv15617496	copy number loss	1-0821-003	SNP array	Genotyping	16
nssv15620330	copy number loss	1-0962-003	SNP array	Genotyping	27
nssv15622392	copy number loss	1-1031-003	SNP array	Genotyping	23
nssv15623498	copy number loss	1-0261-002	SNP array	Genotyping	21
nssv15624443	copy number loss	1-0045-003	SNP array	Genotyping	24
nssv15628359	copy number loss	1-0514-002	SNP array	Genotyping	19
nssv15629973	copy number loss	1-0599-002	SNP array	Genotyping	27
nssv15630040	copy number loss	1-0599-005	SNP array	Genotyping	23
nssv15632791	copy number loss	10-0008-002	SNP array	Genotyping	20
nssv15632840	copy number loss	10-0009-003	SNP array	Genotyping	25
nssv15640810	copy number loss	14-0271-001	SNP array	Genotyping	19
nssv15642120	copy number loss	16-1001-001	SNP array	Genotyping	28
nssv15645418	copy number loss	2-0171-004	SNP array	Genotyping	20
nssv15646503	copy number loss	2-1189-003	SNP array	Genotyping	24
nssv15646934	copy number loss	2-1094-004	SNP array	Genotyping	25
nssv15647185	copy number loss	2-1085-001	SNP array	Genotyping	21
nssv15648247	copy number loss	2-1237-003	SNP array	Genotyping	13
nssv15648639	copy number loss	2-1258-004	SNP array	Genotyping	26
nssv15649022	copy number loss	2-1169-002	SNP array	Genotyping	20
nssv15649766	copy number loss	2-1352-003	SNP array	Genotyping	26
nssv15650304	copy number loss	2-1337-002	SNP array	Genotyping	24
nssv15650795	copy number loss	2-1368-002	SNP array	Genotyping	26
nssv15650868	copy number loss	2-1408-002	SNP array	Genotyping	22
nssv15651036	copy number loss	2-1408-004	SNP array	Genotyping	17
nssv15651205	copy number loss	2-1368-003	SNP array	Genotyping	22
nssv15653100	copy number loss	2-1622-003	SNP array	Genotyping	18
nssv15653145	copy number loss	2-1623-003	SNP array	Genotyping	17
nssv15655400	copy number loss	3-0107-000	SNP array	Genotyping	21
nssv15656099	copy number loss	3-0634-000	SNP array	Genotyping	17
nssv15663163	copy number loss	4-0055-001	SNP array	Genotyping	21
nssv15663565	copy number gain	5-0149-003	SNP array	Genotyping	26
nssv15665929	copy number loss	7-0115-003	SNP array	Genotyping	19
nssv15666838	copy number loss	7-0113-003	SNP array	Genotyping	19
nssv15672475	copy number loss	9-0006-003	SNP array	Genotyping	19
nssv15674361	copy number loss	9-0034-002	SNP array	Genotyping	27
nssv15675035	copy number loss	209351	SNP array	Genotyping	35
nssv15678110	copy number loss	245252S	SNP array	Genotyping	27
nssv15680384	copy number loss	239187S	SNP array	Genotyping	27
nssv15681359	copy number loss	OCD102-1580	SNP array	Genotyping	19
nssv15692921	copy number loss	OCD77-896703	SNP array	Genotyping	27
nssv15693944	copy number loss	OCD97-1400-2	SNP array	Genotyping	19
nssv15696116	copy number loss	197232	SNP array	Genotyping	24
nssv15697176	copy number loss	155474	SNP array	Genotyping	16

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15616102	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15617496	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15620330	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15622392	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15623498	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15624443	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15628359	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15629973	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15630040	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15632791	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15632840	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15640810	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15642120	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15645418	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15646503	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15646934	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15647185	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15648247	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15648639	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15649022	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15649766	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15650304	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15650795	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15650868	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15651036	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15651205	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15653100	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15653145	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15655400	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15656099	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15663163	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15663565	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15665929	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15666838	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15672475	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15674361	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15675035	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15678110	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15680384	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15681359	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15692921	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15693944	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15696116	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15697176	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,879,465
nssv15616102	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15617496	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15620330	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15622392	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15623498	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15624443	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15628359	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15629973	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15630040	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15632791	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15632840	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15640810	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15642120	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15645418	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15646503	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15646934	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15647185	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15648247	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15648639	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15649022	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15649766	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15650304	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15650795	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15650868	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15651036	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15651205	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15653100	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15653145	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15655400	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15656099	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15663163	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15663565	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)dup	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15665929	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15666838	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15672475	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15674361	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15675035	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15678110	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15680384	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15681359	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15692921	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15693944	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15696116	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370
nssv15697176	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,385,370

dbVar

Database of genomic structural variation

nsv4371731

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant