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dbVar

Database of genomic structural variation

nsv4372546

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:67,895

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 645 SVs from 78 studies. See in: genome view

Remapped(Score: Perfect):32,102,613-32,170,507

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4372546	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nsv4372546	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	32,102,719	32,170,613

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15612180	copy number gain	1-0656-002	SNP array	Genotyping	25
nssv15624147	copy number gain	1-0261-003	SNP array	Genotyping	20
nssv15633401	copy number gain	12-4098-002	SNP array	Genotyping	22
nssv15646399	copy number gain	2-1185-003	SNP array	Genotyping	13
nssv15660716	copy number gain	5-0043-003	SNP array	Genotyping	22
nssv15681525	copy number gain	OCD109-1649	SNP array	Genotyping	22
nssv15693090	copy number gain	OCD85-896743	SNP array	Genotyping	22
nssv15695549	copy number gain	201953	SNP array	Genotyping	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15612180	Remapped	Perfect	NC_000005.10:g.(?_ 32102613)_(3217050 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nssv15624147	Remapped	Perfect	NC_000005.10:g.(?_ 32102613)_(3217050 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nssv15633401	Remapped	Perfect	NC_000005.10:g.(?_ 32102613)_(3217050 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nssv15646399	Remapped	Perfect	NC_000005.10:g.(?_ 32102613)_(3217050 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nssv15660716	Remapped	Perfect	NC_000005.10:g.(?_ 32102613)_(3217050 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nssv15681525	Remapped	Perfect	NC_000005.10:g.(?_ 32102613)_(3217050 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nssv15693090	Remapped	Perfect	NC_000005.10:g.(?_ 32102613)_(3217050 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nssv15695549	Remapped	Perfect	NC_000005.10:g.(?_ 32102613)_(3217050 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	32,102,613	32,170,507
nssv15612180	Submitted genomic		NC_000005.9:g.(?_3 2102719)_(32170613 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	32,102,719	32,170,613
nssv15624147	Submitted genomic		NC_000005.9:g.(?_3 2102719)_(32170613 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	32,102,719	32,170,613
nssv15633401	Submitted genomic		NC_000005.9:g.(?_3 2102719)_(32170613 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	32,102,719	32,170,613
nssv15646399	Submitted genomic		NC_000005.9:g.(?_3 2102719)_(32170613 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	32,102,719	32,170,613
nssv15660716	Submitted genomic		NC_000005.9:g.(?_3 2102719)_(32170613 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	32,102,719	32,170,613
nssv15681525	Submitted genomic		NC_000005.9:g.(?_3 2102719)_(32170613 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	32,102,719	32,170,613
nssv15693090	Submitted genomic		NC_000005.9:g.(?_3 2102719)_(32170613 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	32,102,719	32,170,613
nssv15695549	Submitted genomic		NC_000005.9:g.(?_3 2102719)_(32170613 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	32,102,719	32,170,613

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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