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dbVar

Database of genomic structural variation

nsv4372628

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:54,842

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 527 SVs from 77 studies. See in: genome view

Remapped(Score: Pass):97,490,656-97,545,497

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4372628	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	97,490,656	97,545,497
nsv4372628	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	98,063,371	98,161,960

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15617422	copy number loss	1-0844-003	SNP array	Genotyping	21
nssv15637533	copy number loss	14-0050-002	SNP array	Genotyping	20
nssv15640440	copy number loss	14-0286-003	SNP array	Genotyping	22
nssv15654967	copy number loss	2-1632-002	SNP array	Genotyping	20
nssv15660429	copy number loss	4-0075-003	SNP array	Genotyping	24
nssv15689898	copy number gain	OCD1158-S_HAM503	SNP array	Genotyping	22
nssv15693863	copy number gain	OCD70-896293	SNP array	Genotyping	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15617422	Remapped	Pass	NC_000002.12:g.(?_ 97490656)_(9754549 7_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,490,656	97,545,497
nssv15637533	Remapped	Pass	NC_000002.12:g.(?_ 97490656)_(9754549 7_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,490,656	97,545,497
nssv15640440	Remapped	Pass	NC_000002.12:g.(?_ 97490656)_(9754549 7_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,490,656	97,545,497
nssv15654967	Remapped	Pass	NC_000002.12:g.(?_ 97490656)_(9754549 7_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,490,656	97,545,497
nssv15660429	Remapped	Pass	NC_000002.12:g.(?_ 97490656)_(9754549 7_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,490,656	97,545,497
nssv15689898	Remapped	Pass	NC_000002.12:g.(?_ 97490656)_(9754549 7_?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,490,656	97,545,497
nssv15693863	Remapped	Pass	NC_000002.12:g.(?_ 97490656)_(9754549 7_?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,490,656	97,545,497
nssv15617422	Submitted genomic		NC_000002.11:g.(?_ 98063371)_(9816196 0_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,063,371	98,161,960
nssv15637533	Submitted genomic		NC_000002.11:g.(?_ 98063371)_(9816196 0_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,063,371	98,161,960
nssv15640440	Submitted genomic		NC_000002.11:g.(?_ 98063371)_(9816196 0_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,063,371	98,161,960
nssv15654967	Submitted genomic		NC_000002.11:g.(?_ 98063371)_(9816196 0_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,063,371	98,161,960
nssv15660429	Submitted genomic		NC_000002.11:g.(?_ 98063371)_(9816196 0_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,063,371	98,161,960
nssv15689898	Submitted genomic		NC_000002.11:g.(?_ 98063371)_(9816196 0_?)dup	GRCh37 (hg19)		NC_000002.11	Chr2	98,063,371	98,161,960
nssv15693863	Submitted genomic		NC_000002.11:g.(?_ 98063371)_(9816196 0_?)dup	GRCh37 (hg19)		NC_000002.11	Chr2	98,063,371	98,161,960

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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