nsv4372918

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:35
Validation:Not tested
Clinical Assertions: No
Region Size:20,072

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 790 SVs from 91 studies. See in: genome view

Remapped(Score: Perfect):18,919,650-18,939,721

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4372918	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nsv4372918	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	18,941,197	18,961,268

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15611794	copy number loss	1-0112-003	SNP array	Genotyping	23
nssv15611960	copy number gain	1-0638-002	SNP array	Genotyping	20
nssv15612831	copy number gain	1-0675-001	SNP array	Genotyping	27
nssv15613157	copy number gain	1-0677-002	SNP array	Genotyping	20
nssv15614089	copy number gain	1-0731-003	SNP array	Genotyping	21
nssv15618348	copy number gain	1-0866-003	SNP array	Genotyping	14
nssv15627736	copy number gain	1-0534-003	SNP array	Genotyping	16
nssv15628334	copy number gain	1-0514-001	SNP array	Genotyping	17
nssv15630526	copy number gain	1-0576-001	SNP array	Genotyping	19
nssv15631479	copy number gain	1-0628-003	SNP array	Genotyping	22
nssv15637488	copy number gain	14-0044-004	SNP array	Genotyping	24
nssv15641956	copy number gain	15-1126-004	SNP array	Genotyping	21
nssv15645009	copy number gain	2-0272-002	SNP array	Genotyping	19
nssv15645412	copy number loss	2-0171-004	SNP array	Genotyping	20
nssv15645511	copy number gain	2-0299-003	SNP array	Genotyping	23
nssv15654068	copy number gain	2-1690-002	SNP array	Genotyping	24
nssv15659321	copy number gain	3-0647-000	SNP array	Genotyping	13
nssv15662553	copy number gain	5-0074-001	SNP array	Genotyping	23
nssv15663447	copy number gain	5-0131-001	SNP array	Genotyping	25
nssv15663983	copy number gain	5-0144-001	SNP array	Genotyping	23
nssv15670588	copy number gain	7-0196-003	SNP array	Genotyping	21
nssv15673411	copy number gain	9-0030-002	SNP array	Genotyping	24
nssv15676679	copy number loss	173373	SNP array	Genotyping	13
nssv15678754	copy number gain	242268S	SNP array	Genotyping	22
nssv15679105	copy number gain	242406S	SNP array	Genotyping	25
nssv15679791	copy number gain	207273	SNP array	Genotyping	16
nssv15681139	copy number loss	193294	SNP array	Genotyping	26
nssv15681392	copy number loss	OCD103-1584	SNP array	Genotyping	21
nssv15686046	copy number gain	OCD176-8961183	SNP array	Genotyping	20
nssv15690929	copy number loss	OCD172-GW-376_1811	SNP array	Genotyping	22
nssv15693145	copy number loss	OCD86-896851	SNP array	Genotyping	29
nssv15696837	copy number gain	218093	SNP array	Genotyping	20
nssv15697210	copy number loss	150332	SNP array	Genotyping	17
nssv15697227	copy number loss	155931	SNP array	Genotyping	10
nssv15701663	copy number gain	225368	SNP array	Genotyping	31

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15611794	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15611960	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15612831	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15613157	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15614089	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15618348	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15627736	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15628334	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15630526	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15631479	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15637488	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15641956	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15645009	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15645412	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15645511	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15654068	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15659321	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15662553	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15663447	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15663983	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15670588	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15673411	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15676679	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15678754	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15679105	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15679791	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15681139	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15681392	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15686046	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15690929	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15693145	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15696837	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15697210	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15697227	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15701663	Remapped	Perfect	NC_000011.10:g.(?_ 18919650)_(1893972 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,650	18,939,721
nssv15611794	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15611960	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15612831	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15613157	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15614089	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15618348	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15627736	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15628334	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15630526	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15631479	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15637488	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15641956	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15645009	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15645412	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15645511	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15654068	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15659321	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15662553	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15663447	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15663983	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15670588	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15673411	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15676679	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15678754	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15679105	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15679791	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15681139	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15681392	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15686046	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15690929	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15693145	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15696837	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15697210	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15697227	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268
nssv15701663	Submitted genomic		NC_000011.9:g.(?_1 8941197)_(18961268 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,197	18,961,268

dbVar

Database of genomic structural variation

nsv4372918

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant