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dbVar

Database of genomic structural variation

nsv4373025

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:153,915

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2078 SVs from 98 studies. See in: genome view

Remapped(Score: Perfect):24,105,709-24,259,623

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4373025	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	24,105,709	24,259,623
nsv4373025	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	24,350,856	24,504,770

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15626618	copy number loss	1-0447-002	SNP array	Genotyping	22
nssv15633147	copy number loss	11-0008-003	SNP array	Genotyping	23
nssv15638947	copy number loss	14-0179-002	SNP array	Genotyping	24
nssv15649688	copy number loss	2-1329-002	SNP array	Genotyping	14
nssv15661222	copy number loss	5-0061-001	SNP array	Genotyping	21
nssv15689952	copy number gain	OCD116-S_1693	SNP array	Genotyping	20
nssv15701180	copy number loss	179670	SNP array	Genotyping	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15626618	Remapped	Perfect	NC_000015.10:g.(?_ 24105709)_(2425962 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,105,709	24,259,623
nssv15633147	Remapped	Perfect	NC_000015.10:g.(?_ 24105709)_(2425962 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,105,709	24,259,623
nssv15638947	Remapped	Perfect	NC_000015.10:g.(?_ 24105709)_(2425962 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,105,709	24,259,623
nssv15649688	Remapped	Perfect	NC_000015.10:g.(?_ 24105709)_(2425962 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,105,709	24,259,623
nssv15661222	Remapped	Perfect	NC_000015.10:g.(?_ 24105709)_(2425962 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,105,709	24,259,623
nssv15689952	Remapped	Perfect	NC_000015.10:g.(?_ 24105709)_(2425962 3_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,105,709	24,259,623
nssv15701180	Remapped	Perfect	NC_000015.10:g.(?_ 24105709)_(2425962 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,105,709	24,259,623
nssv15626618	Submitted genomic		NC_000015.9:g.(?_2 4350856)_(24504770 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	24,350,856	24,504,770
nssv15633147	Submitted genomic		NC_000015.9:g.(?_2 4350856)_(24504770 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	24,350,856	24,504,770
nssv15638947	Submitted genomic		NC_000015.9:g.(?_2 4350856)_(24504770 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	24,350,856	24,504,770
nssv15649688	Submitted genomic		NC_000015.9:g.(?_2 4350856)_(24504770 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	24,350,856	24,504,770
nssv15661222	Submitted genomic		NC_000015.9:g.(?_2 4350856)_(24504770 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	24,350,856	24,504,770
nssv15689952	Submitted genomic		NC_000015.9:g.(?_2 4350856)_(24504770 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,350,856	24,504,770
nssv15701180	Submitted genomic		NC_000015.9:g.(?_2 4350856)_(24504770 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	24,350,856	24,504,770

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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