Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv4373402

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:23,903

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 461 SVs from 70 studies. See in: genome view

Remapped(Score: Perfect):156,044,674-156,068,576

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4373402	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nsv4373402	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	155,471,684	155,495,586

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15646416	copy number loss	2-1186-001	SNP array	Genotyping	21
nssv15647744	copy number loss	2-0319-003	SNP array	Genotyping	15
nssv15647756	copy number loss	2-0319-004	SNP array	Genotyping	12
nssv15648568	copy number loss	2-1246-001	SNP array	Genotyping	26
nssv15684099	copy number loss	OCD148-KJ-1488	SNP array	Genotyping	20
nssv15687232	copy number loss	OCD39-S_0625-1152-3	SNP array	Genotyping	25
nssv15689943	copy number loss	OCD116-B_1695	SNP array	Genotyping	20
nssv15690370	copy number loss	OCD142-0625-7951-2	SNP array	Genotyping	27
nssv15691478	copy number loss	OCD43-B_AF-1234	SNP array	Genotyping	23

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15646416	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15647744	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15647756	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15648568	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15684099	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15687232	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15689943	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15690370	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15691478	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156068 576_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,068,576
nssv15646416	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586
nssv15647744	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586
nssv15647756	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586
nssv15648568	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586
nssv15684099	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586
nssv15687232	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586
nssv15689943	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586
nssv15690370	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586
nssv15691478	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1554955 86_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,495,586

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI