nsv4373803
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:280,950
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3123 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 3153 SVs from 99 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4373803 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 32,559,611 | 32,840,560 |
| nsv4373803 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 32,570,932 | 32,851,881 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15685358 | copy number loss | OCD118-S_1712 | SNP array | Genotyping | 23 |
| nssv15695687 | copy number loss | OCD95-1054 | SNP array | Genotyping | 16 |
| nssv15698013 | copy number loss | 198587 | SNP array | Genotyping | 22 |
| nssv15698584 | copy number loss | 159367 | SNP array | Genotyping | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15685358 | Remapped | Perfect | NC_000016.10:g.(?_ 32559611)_(3284056 0_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,559,611 | 32,840,560 |
| nssv15695687 | Remapped | Perfect | NC_000016.10:g.(?_ 32559611)_(3284056 0_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,559,611 | 32,840,560 |
| nssv15698013 | Remapped | Perfect | NC_000016.10:g.(?_ 32559611)_(3284056 0_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,559,611 | 32,840,560 |
| nssv15698584 | Remapped | Perfect | NC_000016.10:g.(?_ 32559611)_(3284056 0_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,559,611 | 32,840,560 |
| nssv15685358 | Submitted genomic | NC_000016.9:g.(?_3 2570932)_(32851881 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 32,570,932 | 32,851,881 | ||
| nssv15695687 | Submitted genomic | NC_000016.9:g.(?_3 2570932)_(32851881 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 32,570,932 | 32,851,881 | ||
| nssv15698013 | Submitted genomic | NC_000016.9:g.(?_3 2570932)_(32851881 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 32,570,932 | 32,851,881 | ||
| nssv15698584 | Submitted genomic | NC_000016.9:g.(?_3 2570932)_(32851881 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 32,570,932 | 32,851,881 |