nsv4373914

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:46
Validation:Not tested
Clinical Assertions: No
Region Size:67,127

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 768 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):180,948,302-181,015,428

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4373914	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nsv4373914	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	180,375,302	180,442,428

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15617442	copy number gain	1-0844-004	SNP array	Genotyping	17
nssv15618579	copy number gain	1-0845-003	SNP array	Genotyping	36
nssv15619890	copy number gain	1-0917-003	SNP array	Genotyping	21
nssv15619944	copy number gain	1-0947-003	SNP array	Genotyping	22
nssv15620025	copy number gain	1-0970-003	SNP array	Genotyping	17
nssv15620599	copy number gain	1-0974-003	SNP array	Genotyping	19
nssv15621248	copy number gain	1-0989-003	SNP array	Genotyping	27
nssv15634847	copy number gain	12-8214-002	SNP array	Genotyping	19
nssv15635565	copy number gain	12-4676-002	SNP array	Genotyping	17
nssv15636723	copy number gain	14-0024-002	SNP array	Genotyping	28
nssv15636897	copy number gain	14-0017-002	SNP array	Genotyping	26
nssv15638025	copy number gain	14-0063-001	SNP array	Genotyping	19
nssv15638131	copy number gain	14-0112-001	SNP array	Genotyping	18
nssv15638243	copy number gain	14-0050-004	SNP array	Genotyping	15
nssv15638717	copy number gain	14-0010-004	SNP array	Genotyping	15
nssv15638849	copy number gain	14-0034-002	SNP array	Genotyping	20
nssv15639338	copy number gain	14-0179-002	SNP array	Genotyping	24
nssv15640249	copy number gain	14-0124-002	SNP array	Genotyping	22
nssv15640389	copy number gain	14-0152-002	SNP array	Genotyping	24
nssv15641022	copy number gain	14-0323-002	SNP array	Genotyping	22
nssv15641129	copy number gain	14-0384-001	SNP array	Genotyping	28
nssv15646127	copy number gain	16-1023-002	SNP array	Genotyping	19
nssv15649795	copy number loss	2-1355-001	SNP array	Genotyping	14
nssv15650098	copy number gain	2-1294-004	SNP array	Genotyping	20
nssv15652662	copy number gain	2-1566-003	SNP array	Genotyping	25
nssv15655957	copy number loss	2-1750-003	SNP array	Genotyping	27
nssv15656172	copy number gain	3-0703-000	SNP array	Genotyping	28
nssv15656896	copy number gain	3-0663-000	SNP array	Genotyping	28
nssv15659170	copy number gain	4-0068-001	SNP array	Genotyping	19
nssv15660921	copy number gain	4-0054-001	SNP array	Genotyping	21
nssv15665341	copy number gain	7-0024-005	SNP array	Genotyping	21
nssv15667946	copy number gain	7-0160-003	SNP array	Genotyping	19
nssv15668358	copy number gain	7-0191-003	SNP array	Genotyping	18
nssv15668695	copy number gain	7-0213-004	SNP array	Genotyping	25
nssv15670099	copy number gain	7-0256-003	SNP array	Genotyping	22
nssv15670166	copy number gain	7-0259-003	SNP array	Genotyping	14
nssv15670966	copy number gain	7-0288-004	SNP array	Genotyping	20
nssv15673204	copy number gain	9-0036-001	SNP array	Genotyping	24
nssv15679100	copy number gain	242059S	SNP array	Genotyping	21
nssv15688582	copy number loss	OCD34-S_896673	SNP array	Genotyping	21
nssv15690509	copy number loss	OCD145-HM-1349(188527)	SNP array	Genotyping	20
nssv15693522	copy number loss	OCD71-896303	SNP array	Genotyping	19
nssv15694984	copy number loss	188856	SNP array	Genotyping	26
nssv15697408	copy number loss	157172	SNP array	Genotyping	20
nssv15698989	copy number loss	201189	SNP array	Genotyping	22
nssv15701883	copy number loss	79330	SNP array	Genotyping	23

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15617442	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15618579	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15619890	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15619944	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15620025	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15620599	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15621248	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15634847	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15635565	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15636723	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15636897	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15638025	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15638131	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15638243	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15638717	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15638849	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15639338	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15640249	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15640389	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15641022	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15641129	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15646127	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15649795	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15650098	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15652662	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15655957	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15656172	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15656896	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15659170	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15660921	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15665341	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15667946	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15668358	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15668695	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15670099	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15670166	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15670966	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15673204	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15679100	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15688582	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15690509	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15693522	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15694984	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15697408	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15698989	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15701883	Remapped	Perfect	NC_000005.10:g.(?_ 180948302)_(181015 428_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,948,302	181,015,428
nssv15617442	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15618579	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15619890	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15619944	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15620025	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15620599	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15621248	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15634847	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15635565	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15636723	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15636897	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15638025	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15638131	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15638243	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15638717	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15638849	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15639338	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15640249	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15640389	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15641022	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15641129	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15646127	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15649795	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15650098	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15652662	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15655957	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15656172	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15656896	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15659170	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15660921	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15665341	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15667946	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15668358	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15668695	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15670099	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15670166	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15670966	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15673204	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15679100	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15688582	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15690509	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15693522	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15694984	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15697408	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15698989	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428
nssv15701883	Submitted genomic		NC_000005.9:g.(?_1 80375302)_(1804424 28_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	180,375,302	180,442,428

dbVar

Database of genomic structural variation

nsv4373914

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant