nsv4374105
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:23,698
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 594 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 594 SVs from 84 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4374105 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nsv4374105 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15617411 | copy number gain | 1-0844-003 | SNP array | Genotyping | 21 |
| nssv15619340 | copy number gain | 1-0898-003 | SNP array | Genotyping | 19 |
| nssv15621660 | copy number loss | 1-1008-001 | SNP array | Genotyping | 20 |
| nssv15623234 | copy number loss | 1-0228-003 | SNP array | Genotyping | 21 |
| nssv15630893 | copy number loss | 1-0628-004 | SNP array | Genotyping | 20 |
| nssv15635924 | copy number loss | 12-4261-002 | SNP array | Genotyping | 17 |
| nssv15640536 | copy number gain | 14-0332-003 | SNP array | Genotyping | 23 |
| nssv15641573 | copy number gain | 14-0170-002 | SNP array | Genotyping | 30 |
| nssv15644593 | copy number gain | 15-1134-002 | SNP array | Genotyping | 25 |
| nssv15656129 | copy number loss | 3-0657-002 | SNP array | Genotyping | 15 |
| nssv15672789 | copy number gain | 9-0002-002 | SNP array | Genotyping | 19 |
| nssv15675510 | copy number gain | 156385 | SNP array | Genotyping | 26 |
| nssv15680262 | copy number loss | 222689 | SNP array | Genotyping | 17 |
| nssv15696098 | copy number gain | 155473 | SNP array | Genotyping | 18 |
| nssv15699442 | copy number loss | 139978 | SNP array | Genotyping | 23 |
| nssv15699476 | copy number gain | 168203 | SNP array | Genotyping | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15617411 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15619340 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15621660 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15623234 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15630893 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15635924 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15640536 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15641573 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15644593 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15656129 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15672789 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15675510 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15680262 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15696098 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15699442 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15699476 | Remapped | Perfect | NC_000011.10:g.(?_ 4946133)_(4969830_ ?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 4,946,133 | 4,969,830 |
| nssv15617411 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15619340 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15621660 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15623234 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15630893 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15635924 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15640536 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15641573 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15644593 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15656129 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15672789 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15675510 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15680262 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15696098 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15699442 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 | ||
| nssv15699476 | Submitted genomic | NC_000011.9:g.(?_4 967363)_(4991060_? )dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 4,967,363 | 4,991,060 |