nsv4374180
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:48,032
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 390 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 390 SVs from 53 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4374180 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nsv4374180 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15615097 | copy number loss | 1-0139-002 | SNP array | Genotyping | 16 |
| nssv15615240 | copy number loss | 1-0139-003 | SNP array | Genotyping | 16 |
| nssv15621848 | copy number loss | 1-1040-003 | SNP array | Genotyping | 20 |
| nssv15625844 | copy number loss | 1-0389-005 | SNP array | Genotyping | 16 |
| nssv15642663 | copy number loss | 14-0356-003 | SNP array | Genotyping | 29 |
| nssv15643447 | copy number loss | 16-1012-003 | SNP array | Genotyping | 26 |
| nssv15646075 | copy number loss | 16-1012-001 | SNP array | Genotyping | 25 |
| nssv15657158 | copy number loss | 3-0021-000 | SNP array | Genotyping | 26 |
| nssv15659785 | copy number loss | 4-0073-002 | SNP array | Genotyping | 24 |
| nssv15667054 | copy number loss | 7-0150-003 | SNP array | Genotyping | 26 |
| nssv15670291 | copy number loss | 7-0292-003 | SNP array | Genotyping | 26 |
| nssv15677299 | copy number loss | 237804S | SNP array | Genotyping | 26 |
| nssv15678089 | copy number loss | 242811S | SNP array | Genotyping | 17 |
| nssv15689000 | copy number loss | 228235 | SNP array | Genotyping | 22 |
| nssv15689093 | copy number loss | 234385S | SNP array | Genotyping | 21 |
| nssv15694408 | copy number loss | OCD89-0625-2318-1 | SNP array | Genotyping | 16 |
| nssv15694455 | copy number loss | OCD89-0625-2318-3 | SNP array | Genotyping | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15615097 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15615240 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15621848 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15625844 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15642663 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15643447 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15646075 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15657158 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15659785 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15667054 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15670291 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15677299 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15678089 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15689000 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15689093 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15694408 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15694455 | Remapped | Perfect | NC_000015.10:g.(?_ 87287341)_(8733537 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 87,287,341 | 87,335,372 |
| nssv15615097 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15615240 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15621848 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15625844 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15642663 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15643447 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15646075 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15657158 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15659785 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15667054 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15670291 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15677299 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15678089 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15689000 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15689093 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15694408 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 | ||
| nssv15694455 | Submitted genomic | NC_000015.9:g.(?_8 7830572)_(87878603 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 87,830,572 | 87,878,603 |