nsv4374519

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:45
Validation:Not tested
Clinical Assertions: No
Region Size:26,543

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 711 SVs from 84 studies. See in: genome view

Remapped(Score: Perfect):68,664,010-68,690,552

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4374519	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nsv4374519	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000013.10	Chr13	69,238,142	69,264,684

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15617156	copy number loss	1-0777-003	SNP array	Genotyping	26
nssv15617512	copy number loss	1-0153-001	SNP array	Genotyping	21
nssv15617753	copy number loss	1-0153-005	SNP array	Genotyping	15
nssv15622479	copy number loss	1-0219-001	SNP array	Genotyping	18
nssv15623598	copy number loss	1-0269-005	SNP array	Genotyping	22
nssv15626739	copy number loss	1-0445-001	SNP array	Genotyping	15
nssv15628681	copy number loss	1-0065-004	SNP array	Genotyping	18
nssv15628827	copy number loss	1-0559-001	SNP array	Genotyping	28
nssv15636707	copy number loss	14-0024-002	SNP array	Genotyping	28
nssv15644337	copy number loss	16-1006-002	SNP array	Genotyping	17
nssv15645436	copy number loss	2-0197-001	SNP array	Genotyping	20
nssv15646849	copy number loss	2-1089-003	SNP array	Genotyping	19
nssv15647336	copy number loss	2-1235-001	SNP array	Genotyping	23
nssv15650826	copy number loss	2-1402-003	SNP array	Genotyping	17
nssv15651015	copy number loss	2-1408-003	SNP array	Genotyping	17
nssv15651693	copy number loss	2-1529-001	SNP array	Genotyping	14
nssv15655565	copy number loss	3-0497-000	SNP array	Genotyping	18
nssv15655582	copy number loss	3-0497-001	SNP array	Genotyping	21
nssv15667635	copy number loss	5-1000-003	SNP array	Genotyping	18
nssv15669756	copy number loss	7-0244-003	SNP array	Genotyping	19
nssv15670663	copy number loss	7-0201-003	SNP array	Genotyping	23
nssv15671251	copy number loss	7-0280-001	SNP array	Genotyping	22
nssv15671275	copy number loss	7-0280-003	SNP array	Genotyping	21
nssv15678472	copy number loss	204956	SNP array	Genotyping	29
nssv15679635	copy number loss	182128	SNP array	Genotyping	18
nssv15680668	copy number loss	215270	SNP array	Genotyping	21
nssv15680965	copy number loss	181226	SNP array	Genotyping	18
nssv15681091	copy number loss	181221	SNP array	Genotyping	20
nssv15682998	copy number loss	OCD122-B_1637	SNP array	Genotyping	19
nssv15683422	copy number loss	OCD122-S_1639	SNP array	Genotyping	17
nssv15684159	copy number loss	OCD107-1632	SNP array	Genotyping	20
nssv15685341	copy number loss	OCD118-B_1711	SNP array	Genotyping	16
nssv15686406	copy number loss	OCD135-896462	SNP array	Genotyping	28
nssv15686772	copy number loss	OCD26-S_896513	SNP array	Genotyping	28
nssv15686985	copy number loss	OCD38-S_0625-1127-2	SNP array	Genotyping	18
nssv15688640	copy number loss	OCD36-S_0625-0144-2	SNP array	Genotyping	22
nssv15689560	copy number loss	OCD111-S_1657	SNP array	Genotyping	25
nssv15689626	copy number loss	OCD1116-0625-2200-3	SNP array	Genotyping	19
nssv15689745	copy number loss	OCD1128-944	SNP array	Genotyping	19
nssv15694362	copy number loss	OCD87-896881	SNP array	Genotyping	27
nssv15695700	copy number loss	OCD95-1055	SNP array	Genotyping	21
nssv15696522	copy number loss	159785	SNP array	Genotyping	19
nssv15699913	copy number loss	79158	SNP array	Genotyping	20
nssv15701476	copy number loss	204187	SNP array	Genotyping	23
nssv15701643	copy number loss	224904	SNP array	Genotyping	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15617156	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15617512	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15617753	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15622479	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15623598	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15626739	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15628681	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15628827	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15636707	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15644337	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15645436	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15646849	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15647336	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15650826	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15651015	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15651693	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15655565	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15655582	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15667635	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15669756	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15670663	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15671251	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15671275	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15678472	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15679635	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15680668	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15680965	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15681091	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15682998	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15683422	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15684159	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15685341	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15686406	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15686772	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15686985	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15688640	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15689560	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15689626	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15689745	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15694362	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15695700	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15696522	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15699913	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15701476	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15701643	Remapped	Perfect	NC_000013.11:g.(?_ 68664010)_(6869055 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	68,664,010	68,690,552
nssv15617156	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15617512	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15617753	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15622479	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15623598	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15626739	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15628681	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15628827	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15636707	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15644337	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15645436	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15646849	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15647336	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15650826	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15651015	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15651693	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15655565	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15655582	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15667635	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15669756	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15670663	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15671251	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15671275	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15678472	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15679635	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15680668	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15680965	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15681091	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15682998	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15683422	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15684159	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15685341	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15686406	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15686772	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15686985	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15688640	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15689560	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15689626	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15689745	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15694362	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15695700	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15696522	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15699913	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15701476	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684
nssv15701643	Submitted genomic		NC_000013.10:g.(?_ 69238142)_(6926468 4_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	69,238,142	69,264,684

dbVar

Database of genomic structural variation

nsv4374519

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant