nsv4375208
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:25
- Validation:Not tested
- Clinical Assertions: No
- Region Size:126,204
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1712 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 1712 SVs from 97 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4375208 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nsv4375208 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15613647 | copy number loss | 1-0700-006 | SNP array | Genotyping | 19 |
| nssv15613651 | copy number loss | 1-0013-003 | SNP array | Genotyping | 27 |
| nssv15616784 | copy number loss | 1-0802-003 | SNP array | Genotyping | 22 |
| nssv15618271 | copy number loss | 1-0862-001 | SNP array | Genotyping | 21 |
| nssv15621300 | copy number loss | 1-1012-003 | SNP array | Genotyping | 25 |
| nssv15621766 | copy number loss | 1-1010-004 | SNP array | Genotyping | 27 |
| nssv15627244 | copy number loss | 1-0479-007 | SNP array | Genotyping | 21 |
| nssv15627691 | copy number loss | 1-0533-003 | SNP array | Genotyping | 17 |
| nssv15634141 | copy number loss | 11-0027-003 | SNP array | Genotyping | 17 |
| nssv15634845 | copy number loss | 12-8214-002 | SNP array | Genotyping | 19 |
| nssv15635988 | copy number loss | 12-4264-005 | SNP array | Genotyping | 21 |
| nssv15648937 | copy number loss | 2-1116-001 | SNP array | Genotyping | 15 |
| nssv15652385 | copy number loss | 2-1505-002 | SNP array | Genotyping | 19 |
| nssv15653568 | copy number loss | 2-1595-001 | SNP array | Genotyping | 24 |
| nssv15656296 | copy number loss | 4-0001-004 | SNP array | Genotyping | 19 |
| nssv15663213 | copy number loss | 4-0058-003 | SNP array | Genotyping | 20 |
| nssv15670405 | copy number loss | 7-0170-003 | SNP array | Genotyping | 31 |
| nssv15670869 | copy number loss | 7-0306-003 | SNP array | Genotyping | 25 |
| nssv15671697 | copy number loss | 9-0004-003 | SNP array | Genotyping | 22 |
| nssv15688612 | copy number loss | OCD35-S_0555-6300-3 | SNP array | Genotyping | 20 |
| nssv15695867 | copy number loss | 212974 | SNP array | Genotyping | 20 |
| nssv15695877 | copy number loss | 217924 | SNP array | Genotyping | 7 |
| nssv15695893 | copy number loss | 214792 | SNP array | Genotyping | 22 |
| nssv15699611 | copy number loss | 198107 | SNP array | Genotyping | 27 |
| nssv15701259 | copy number loss | 205293-2 | SNP array | Genotyping | 16 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15613647 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15613651 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15616784 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15618271 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15621300 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15621766 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15627244 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15627691 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15634141 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15634845 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15635988 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15648937 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15652385 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15653568 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15656296 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15663213 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15670405 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15670869 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15671697 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15688612 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15695867 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15695877 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15695893 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15699611 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15701259 | Remapped | Perfect | NC_000003.12:g.(?_ 162807036)_(162933 239_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,807,036 | 162,933,239 |
| nssv15613647 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15613651 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15616784 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15618271 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15621300 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15621766 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15627244 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15627691 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15634141 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15634845 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15635988 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15648937 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15652385 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15653568 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15656296 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15663213 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15670405 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15670869 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15671697 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15688612 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15695867 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15695877 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15695893 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15699611 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 | ||
| nssv15701259 | Submitted genomic | NC_000003.11:g.(?_ 162524824)_(162651 027_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 162,524,824 | 162,651,027 |