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dbVar

Database of genomic structural variation

nsv4375217

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:38,220

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 478 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):156,044,674-156,082,893

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4375217	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	156,044,674	156,082,893
nsv4375217	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	155,471,684	155,509,903

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15613709	copy number loss	1-0718-003	SNP array	Genotyping	35
nssv15667754	copy number loss	7-0059-003	SNP array	Genotyping	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15613709	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156082 893_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,082,893
nssv15667754	Remapped	Perfect	NC_000005.10:g.(?_ 156044674)_(156082 893_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,044,674	156,082,893
nssv15613709	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1555099 03_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,509,903
nssv15667754	Submitted genomic		NC_000005.9:g.(?_1 55471684)_(1555099 03_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	155,471,684	155,509,903

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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