nsv4375689
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:34
- Validation:Not tested
- Clinical Assertions: No
- Region Size:40,809
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1019 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 1019 SVs from 85 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4375689 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nsv4375689 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15615115 | copy number variation | 1-0748-003 | SNP array | Genotyping | 18 |
| nssv15616158 | copy number variation | 1-0144-003 | SNP array | Genotyping | 20 |
| nssv15621853 | copy number variation | 1-1040-003 | SNP array | Genotyping | 20 |
| nssv15626481 | copy number variation | 1-0051-006 | SNP array | Genotyping | 32 |
| nssv15627022 | copy number variation | 1-0458-005 | SNP array | Genotyping | 25 |
| nssv15630112 | copy number variation | 1-0633-003 | SNP array | Genotyping | 14 |
| nssv15632795 | copy number variation | 10-0008-002 | SNP array | Genotyping | 20 |
| nssv15635625 | copy number variation | 11-0048-003 | SNP array | Genotyping | 35 |
| nssv15640924 | copy number variation | 14-0318-003 | SNP array | Genotyping | 19 |
| nssv15641280 | copy number variation | 14-0312-001 | SNP array | Genotyping | 25 |
| nssv15647740 | copy number variation | 2-0319-003 | SNP array | Genotyping | 15 |
| nssv15648659 | copy number variation | 2-1280-002 | SNP array | Genotyping | 19 |
| nssv15649691 | copy number variation | 2-1329-002 | SNP array | Genotyping | 14 |
| nssv15651991 | copy number variation | 2-1508-001 | SNP array | Genotyping | 18 |
| nssv15657080 | copy number variation | 3-0778-000 | SNP array | Genotyping | 23 |
| nssv15657322 | copy number variation | 3-0380-001 | SNP array | Genotyping | 29 |
| nssv15671212 | copy number variation | 7-0274-003 | SNP array | Genotyping | 15 |
| nssv15671341 | copy number variation | 7-0280-007 | SNP array | Genotyping | 21 |
| nssv15672264 | copy number variation | 9-0029-003 | SNP array | Genotyping | 20 |
| nssv15675554 | copy number variation | 169695 | SNP array | Genotyping | 14 |
| nssv15678158 | copy number variation | 246956S | SNP array | Genotyping | 18 |
| nssv15678821 | copy number variation | 176003 | SNP array | Genotyping | 21 |
| nssv15682406 | copy number variation | OCD110-S_1653 | SNP array | Genotyping | 26 |
| nssv15682668 | copy number variation | OCD1127-715 | SNP array | Genotyping | 18 |
| nssv15683190 | copy number variation | OCD1000-S_896253 | SNP array | Genotyping | 27 |
| nssv15683852 | copy number variation | OCD135-896463 | SNP array | Genotyping | 19 |
| nssv15685169 | copy number variation | OCD166-8961171 | SNP array | Genotyping | 18 |
| nssv15685197 | copy number variation | OCD166-8961173 | SNP array | Genotyping | 13 |
| nssv15686222 | copy number variation | OCD21-S_896392 | SNP array | Genotyping | 26 |
| nssv15687009 | copy number variation | OCD38-S_0625-1127-3 | SNP array | Genotyping | 22 |
| nssv15687857 | copy number variation | OCD51-S_0625-7445-1 | SNP array | Genotyping | 23 |
| nssv15691939 | copy number variation | OCD57-0625-9923-2 | SNP array | Genotyping | 14 |
| nssv15694847 | copy number variation | 220587 | SNP array | Genotyping | 14 |
| nssv15701103 | copy number variation | 169620 | SNP array | Genotyping | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|
| nssv15615115 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15616158 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15621853 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15626481 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15627022 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15630112 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15632795 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15635625 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15640924 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15641280 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15647740 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15648659 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15649691 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15651991 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15657080 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15657322 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15671212 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15671341 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15672264 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15675554 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15678158 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15678821 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15682406 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15682668 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15683190 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15683852 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15685169 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15685197 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15686222 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15687009 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15687857 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15691939 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15694847 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15701103 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,576,543 | 1,617,351 |
| nssv15615115 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15616158 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15621853 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15626481 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15627022 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15630112 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15632795 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15635625 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15640924 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15641280 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15647740 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15648659 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15649691 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15651991 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15657080 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15657322 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15671212 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15671341 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15672264 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15675554 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15678158 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15678821 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15682406 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15682668 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15683190 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15683852 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15685169 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15685197 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15686222 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15687009 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15687857 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15691939 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15694847 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 | ||
| nssv15701103 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 1,557,189 | 1,597,997 |