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dbVar

Database of genomic structural variation

nsv437707

Organism: Homo sapiens

Study:nstd17 (Conrad et al. 2005)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:186,982

Publication(s):Conrad et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 809 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):25,100,812-25,287,793

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv437707	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	25,100,812	25,118,811	25,270,293	25,287,793
nsv437707	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315936.1	Chr11\|NW_0 03315936.1	-	1	123,120	123,120
nsv437707	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	25,122,358	25,140,357	25,291,839	25,309,339
nsv437707	Remapped	Pass	GRCh37.p13	PATCHES	Second Pass	NW_003315936.1	Chr11\|NW_0 03315936.1	-	1	123,120	123,120
nsv437707	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000011.7	Chr11	25,086,667	25,104,666	25,256,148	25,273,648

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv467588	copy number loss	NA19100	SNP array	SNP genotyping analysis	Heterozygous	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv467588	Remapped	Pass	NW_003315936.1:g.( ?_1)_(123120_12312 0)del	GRCh38.p12	Second Pass	NW_003315936.1	Chr11\|NW_0 03315936.1	-	1	123,120	123,120
nssv467588	Remapped	Perfect	NC_000011.10:g.(25 100812_25118811)_( 25270293_25287793) del	GRCh38.p12	First Pass	NC_000011.10	Chr11	25,100,812	25,118,811	25,270,293	25,287,793
nssv467588	Remapped	Pass	NW_003315936.1:g.( ?_1)_(123120_12312 0)del	GRCh37.p13	Second Pass	NW_003315936.1	Chr11\|NW_0 03315936.1	-	1	123,120	123,120
nssv467588	Remapped	Perfect	NC_000011.9:g.(251 22358_25140357)_(2 5291839_25309339)d el	GRCh37.p13	First Pass	NC_000011.9	Chr11	25,122,358	25,140,357	25,291,839	25,309,339
nssv467588	Submitted genomic		NC_000011.7:g.(250 86667_25104666)_(2 5256148_25273648)d el	NCBI34 (hg16)		NC_000011.7	Chr11	25,086,667	25,104,666	25,256,148	25,273,648

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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