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dbVar

Database of genomic structural variation

nsv4377499

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:38,821

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 680 SVs from 74 studies. See in: genome view

Remapped(Score: Perfect):169,246,806-169,285,626

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4377499	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	169,246,806	169,285,626
nsv4377499	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	169,216,044	169,254,864

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15652231	copy number loss	2-1550-002	SNP array	Genotyping	24
nssv15661845	copy number loss	4-0042-001	SNP array	Genotyping	16
nssv15690829	copy number loss	OCD17-S_896322	SNP array	Genotyping	23

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15652231	Remapped	Perfect	NC_000001.11:g.(?_ 169246806)_(169285 626_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	169,246,806	169,285,626
nssv15661845	Remapped	Perfect	NC_000001.11:g.(?_ 169246806)_(169285 626_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	169,246,806	169,285,626
nssv15690829	Remapped	Perfect	NC_000001.11:g.(?_ 169246806)_(169285 626_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	169,246,806	169,285,626
nssv15652231	Submitted genomic		NC_000001.10:g.(?_ 169216044)_(169254 864_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	169,216,044	169,254,864
nssv15661845	Submitted genomic		NC_000001.10:g.(?_ 169216044)_(169254 864_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	169,216,044	169,254,864
nssv15690829	Submitted genomic		NC_000001.10:g.(?_ 169216044)_(169254 864_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	169,216,044	169,254,864

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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