nsv437866
- Organism: Homo sapiens
- Study:nstd20 (McCarroll et al. 2006)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI34 (hg16)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:232,385
- Publication(s):McCarroll et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 797 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 797 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv437866 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 89,198,731 | 89,431,115 |
| nsv437866 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 89,247,881 | 89,480,265 |
| nsv437866 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000003.8 | Chr3 | 89,168,782 | 89,401,166 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv471294 | copy number loss | SNP array | SNP genotyping analysis | ||
| nssv471291 | copy number loss | NA19007 | SNP array | SNP genotyping analysis | 22 |
| nssv471292 | copy number loss | NA12761 | SNP array | SNP genotyping analysis | 15 |
| nssv471293 | copy number loss | NA12752 | SNP array | SNP genotyping analysis | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv471294 | Remapped | Perfect | NC_000003.12:g.(?_ 89198731)_(8943111 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 89,198,731 | 89,431,115 |
| nssv471291 | Remapped | Perfect | NC_000003.12:g.(?_ 89353712)_(8936791 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 89,353,712 | 89,367,914 |
| nssv471292 | Remapped | Perfect | NC_000003.12:g.(?_ 89358106)_(8936791 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 89,358,106 | 89,367,914 |
| nssv471293 | Remapped | Perfect | NC_000003.12:g.(?_ 89358106)_(8936791 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 89,358,106 | 89,367,914 |
| nssv471294 | Remapped | Perfect | NC_000003.11:g.(?_ 89247881)_(8948026 5_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 89,247,881 | 89,480,265 |
| nssv471291 | Remapped | Perfect | NC_000003.11:g.(?_ 89402862)_(8941706 4_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 89,402,862 | 89,417,064 |
| nssv471292 | Remapped | Perfect | NC_000003.11:g.(?_ 89407256)_(8941706 4_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 89,407,256 | 89,417,064 |
| nssv471293 | Remapped | Perfect | NC_000003.11:g.(?_ 89407256)_(8941706 4_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 89,407,256 | 89,417,064 |
| nssv471294 | Submitted genomic | NC_000003.8:g.(?_8 9168782)_(89401166 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 89,168,782 | 89,401,166 | ||
| nssv471291 | Submitted genomic | NC_000003.8:g.(?_8 9323763)_(89337965 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 89,323,763 | 89,337,965 | ||
| nssv471292 | Submitted genomic | NC_000003.8:g.(?_8 9328157)_(89337965 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 89,328,157 | 89,337,965 | ||
| nssv471293 | Submitted genomic | NC_000003.8:g.(?_8 9328157)_(89337965 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 89,328,157 | 89,337,965 |