nsv4379092
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:79,557
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2466 SVs from 106 studies. See in: genome view
Overlapping variant regions from other studies: 2473 SVs from 106 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4379092 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nsv4379092 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15612379 | copy number loss | 1-0665-003 | SNP array | Genotyping | 15 |
| nssv15629651 | copy number loss | 1-0568-001 | SNP array | Genotyping | 21 |
| nssv15631643 | copy number loss | 10-0003-003 | SNP array | Genotyping | 22 |
| nssv15632809 | copy number loss | 10-0008-003 | SNP array | Genotyping | 29 |
| nssv15632833 | copy number loss | 10-0009-003 | SNP array | Genotyping | 25 |
| nssv15645204 | copy number loss | 2-0725-003 | SNP array | Genotyping | 15 |
| nssv15649059 | copy number loss | 2-1171-003 | SNP array | Genotyping | 17 |
| nssv15656641 | copy number loss | 3-0090-001 | SNP array | Genotyping | 18 |
| nssv15661240 | copy number loss | 5-0061-002 | SNP array | Genotyping | 14 |
| nssv15663358 | copy number loss | 4-0064-002 | SNP array | Genotyping | 22 |
| nssv15668952 | copy number loss | 7-0076-003 | SNP array | Genotyping | 22 |
| nssv15695587 | copy number loss | 209030 | SNP array | Genotyping | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15612379 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15629651 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15631643 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15632809 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15632833 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15645204 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15649059 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15656641 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15661240 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15663358 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15668952 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15695587 | Remapped | Perfect | NC_000011.10:g.(?_ 55606543)_(5568609 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,606,543 | 55,686,099 |
| nssv15612379 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15629651 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15631643 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15632809 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15632833 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15645204 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15649059 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15656641 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15661240 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15663358 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15668952 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 | ||
| nssv15695587 | Submitted genomic | NC_000011.9:g.(?_5 5374019)_(55453575 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,374,019 | 55,453,575 |