nsv437914
- Organism: Homo sapiens
- Study:nstd20 (McCarroll et al. 2006)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI34 (hg16)
- Variant Calls:20
- Validation:Not tested
- Clinical Assertions: No
- Region Size:83,605
- Publication(s):McCarroll et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 621 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 621 SVs from 84 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv437914 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 21,290,590 | 21,374,194 |
| nsv437914 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 21,292,213 | 21,375,817 |
| nsv437914 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000004.8 | Chr4 | 21,043,096 | 21,126,700 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv468244 | copy number loss | SNP array | SNP genotyping analysis | ||
| nssv468223 | copy number loss | NA18506 | SNP array | SNP genotyping analysis | 28 |
| nssv468224 | copy number loss | NA18508 | SNP array | SNP genotyping analysis | 15 |
| nssv468225 | copy number loss | NA18854 | SNP array | SNP genotyping analysis | 15 |
| nssv468226 | copy number loss | NA18855 | SNP array | SNP genotyping analysis | 10 |
| nssv468227 | copy number loss | NA18913 | SNP array | SNP genotyping analysis | 15 |
| nssv468228 | copy number loss | NA19094 | SNP array | SNP genotyping analysis | 14 |
| nssv468229 | copy number loss | NA19092 | SNP array | SNP genotyping analysis | 8 |
| nssv468231 | copy number loss | NA19103 | SNP array | SNP genotyping analysis | 19 |
| nssv468232 | copy number loss | NA19201 | SNP array | SNP genotyping analysis | 12 |
| nssv468233 | copy number loss | NA19205 | SNP array | SNP genotyping analysis | 27 |
| nssv468234 | copy number loss | NA19210 | SNP array | SNP genotyping analysis | 11 |
| nssv468235 | copy number loss | NA19159 | SNP array | SNP genotyping analysis | 9 |
| nssv468236 | copy number loss | NA19222 | SNP array | SNP genotyping analysis | 10 |
| nssv468237 | copy number loss | NA19119 | SNP array | SNP genotyping analysis | 14 |
| nssv468238 | copy number loss | NA19145 | SNP array | SNP genotyping analysis | 21 |
| nssv468239 | copy number loss | NA19143 | SNP array | SNP genotyping analysis | 17 |
| nssv468240 | copy number loss | NA19144 | SNP array | SNP genotyping analysis | 9 |
| nssv468242 | copy number loss | NA19192 | SNP array | SNP genotyping analysis | 11 |
| nssv468243 | copy number loss | NA19238 | SNP array | SNP genotyping analysis | 15 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv468244 | Remapped | Perfect | NC_000004.12:g.(?_ 21290590)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,290,590 | 21,374,194 |
| nssv468223 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468224 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468225 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468226 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468227 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468228 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468229 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468231 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468232 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468233 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468234 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468235 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468236 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468237 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468238 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468239 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468240 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468242 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468243 | Remapped | Perfect | NC_000004.12:g.(?_ 21371423)_(2137419 4_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 21,371,423 | 21,374,194 |
| nssv468244 | Remapped | Perfect | NC_000004.11:g.(?_ 21292213)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,292,213 | 21,375,817 |
| nssv468223 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468224 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468225 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468226 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468227 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468228 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468229 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468231 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468232 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468233 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468234 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468235 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468236 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468237 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468238 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468239 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468240 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468242 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468243 | Remapped | Perfect | NC_000004.11:g.(?_ 21373046)_(2137581 7_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 21,373,046 | 21,375,817 |
| nssv468244 | Submitted genomic | NC_000004.8:g.(?_2 1043096)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,043,096 | 21,126,700 | ||
| nssv468223 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468224 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468225 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468226 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468227 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468228 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468229 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468231 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468232 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468233 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468234 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468235 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468236 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468237 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468238 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468239 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468240 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468242 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 | ||
| nssv468243 | Submitted genomic | NC_000004.8:g.(?_2 1123929)_(21126700 _?)del | NCBI34 (hg16) | NC_000004.8 | Chr4 | 21,123,929 | 21,126,700 |