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dbVar

Database of genomic structural variation

nsv4379186

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:56,518

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 856 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):34,777,410-34,833,927

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4379186	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	34,777,410	34,833,927
nsv4379186	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,739	326,256
nsv4379186	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	34,779,032	34,835,549

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15627188	copy number loss	1-0479-003	SNP array	Genotyping	20
nssv15642086	copy number loss	15-1130-002	SNP array	Genotyping	17
nssv15644303	copy number loss	16-1005-004	SNP array	Genotyping	24
nssv15669763	copy number loss	7-0244-003	SNP array	Genotyping	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15627188	Remapped	Perfect	NW_003315915.1:g.( ?_269739)_(326256_ ?)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,739	326,256
nssv15642086	Remapped	Perfect	NW_003315915.1:g.( ?_269739)_(326256_ ?)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,739	326,256
nssv15644303	Remapped	Perfect	NW_003315915.1:g.( ?_269739)_(326256_ ?)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,739	326,256
nssv15669763	Remapped	Perfect	NW_003315915.1:g.( ?_269739)_(326256_ ?)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,739	326,256
nssv15627188	Remapped	Perfect	NC_000004.12:g.(?_ 34777410)_(3483392 7_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,777,410	34,833,927
nssv15642086	Remapped	Perfect	NC_000004.12:g.(?_ 34777410)_(3483392 7_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,777,410	34,833,927
nssv15644303	Remapped	Perfect	NC_000004.12:g.(?_ 34777410)_(3483392 7_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,777,410	34,833,927
nssv15669763	Remapped	Perfect	NC_000004.12:g.(?_ 34777410)_(3483392 7_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,777,410	34,833,927
nssv15627188	Submitted genomic		NC_000004.11:g.(?_ 34779032)_(3483554 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	34,779,032	34,835,549
nssv15642086	Submitted genomic		NC_000004.11:g.(?_ 34779032)_(3483554 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	34,779,032	34,835,549
nssv15644303	Submitted genomic		NC_000004.11:g.(?_ 34779032)_(3483554 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	34,779,032	34,835,549
nssv15669763	Submitted genomic		NC_000004.11:g.(?_ 34779032)_(3483554 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	34,779,032	34,835,549

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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