nsv4379369
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:48,796
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2189 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 2196 SVs from 101 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4379369 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nsv4379369 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15618558 | copy number gain | 1-0171-005 | SNP array | Genotyping | 28 |
| nssv15629056 | copy number gain | 1-0548-002 | SNP array | Genotyping | 22 |
| nssv15630572 | copy number gain | 1-0596-003 | SNP array | Genotyping | 22 |
| nssv15630788 | copy number gain | 1-0625-002 | SNP array | Genotyping | 13 |
| nssv15642529 | copy number gain | 15-1131-004 | SNP array | Genotyping | 20 |
| nssv15644675 | copy number gain | 16-1000-003 | SNP array | Genotyping | 23 |
| nssv15671249 | copy number gain | 7-0280-001 | SNP array | Genotyping | 22 |
| nssv15671840 | copy number gain | 9-0018-001 | SNP array | Genotyping | 20 |
| nssv15679596 | copy number gain | 182123 | SNP array | Genotyping | 24 |
| nssv15680225 | copy number gain | 222687 | SNP array | Genotyping | 19 |
| nssv15682441 | copy number gain | OCD1141-8818 | SNP array | Genotyping | 21 |
| nssv15696520 | copy number gain | 159785 | SNP array | Genotyping | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15618558 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15629056 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15630572 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15630788 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15642529 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15644675 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15671249 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15671840 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15679596 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15680225 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15682441 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15696520 | Remapped | Perfect | NC_000011.10:g.(?_ 55618908)_(5566770 3_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,618,908 | 55,667,703 |
| nssv15618558 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15629056 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15630572 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15630788 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15642529 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15644675 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15671249 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15671840 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15679596 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15680225 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15682441 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 | ||
| nssv15696520 | Submitted genomic | NC_000011.9:g.(?_5 5386384)_(55435179 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,386,384 | 55,435,179 |