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dbVar

Database of genomic structural variation

nsv4379491

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:46,923

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 390 SVs from 53 studies. See in: genome view

Remapped(Score: Perfect):87,287,341-87,334,263

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4379491	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	87,287,341	87,334,263
nsv4379491	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	87,830,572	87,877,494

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15624697	copy number loss	1-0332-002	SNP array	Genotyping	28
nssv15643651	copy number loss	2-0018-003	SNP array	Genotyping	23
nssv15666007	copy number loss	5-0030-002	SNP array	Genotyping	23
nssv15667131	copy number loss	7-0121-003	SNP array	Genotyping	22
nssv15670314	copy number loss	7-0292-004	SNP array	Genotyping	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15624697	Remapped	Perfect	NC_000015.10:g.(?_ 87287341)_(8733426 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	87,287,341	87,334,263
nssv15643651	Remapped	Perfect	NC_000015.10:g.(?_ 87287341)_(8733426 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	87,287,341	87,334,263
nssv15666007	Remapped	Perfect	NC_000015.10:g.(?_ 87287341)_(8733426 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	87,287,341	87,334,263
nssv15667131	Remapped	Perfect	NC_000015.10:g.(?_ 87287341)_(8733426 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	87,287,341	87,334,263
nssv15670314	Remapped	Perfect	NC_000015.10:g.(?_ 87287341)_(8733426 3_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	87,287,341	87,334,263
nssv15624697	Submitted genomic		NC_000015.9:g.(?_8 7830572)_(87877494 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	87,830,572	87,877,494
nssv15643651	Submitted genomic		NC_000015.9:g.(?_8 7830572)_(87877494 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	87,830,572	87,877,494
nssv15666007	Submitted genomic		NC_000015.9:g.(?_8 7830572)_(87877494 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	87,830,572	87,877,494
nssv15667131	Submitted genomic		NC_000015.9:g.(?_8 7830572)_(87877494 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	87,830,572	87,877,494
nssv15670314	Submitted genomic		NC_000015.9:g.(?_8 7830572)_(87877494 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	87,830,572	87,877,494

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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