nsv437973
- Organism: Homo sapiens
- Study:nstd20 (McCarroll et al. 2006)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI34 (hg16)
- Variant Calls:22
- Validation:Not tested
- Clinical Assertions: No
- Region Size:32,472
- Publication(s):McCarroll et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2474 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2474 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 9 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv437973 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 78,290,181 | 78,322,652 |
| nsv437973 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 78,999,898 | 79,032,369 |
| nsv437973 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000006.8 | Chr6 | 78,995,494 | 79,027,965 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv468805 | copy number loss | NA18862 | SNP array | SNP genotyping analysis | 12 |
| nssv468806 | copy number loss | NA18863 | SNP array | SNP genotyping analysis | 16 |
| nssv468808 | copy number loss | NA18913 | SNP array | SNP genotyping analysis | 15 |
| nssv468809 | copy number loss | NA18914 | SNP array | SNP genotyping analysis | 26 |
| nssv468786 | copy number loss | NA12144 | SNP array | SNP genotyping analysis | 17 |
| nssv468787 | copy number loss | NA10846 | SNP array | SNP genotyping analysis | 33 |
| nssv468788 | copy number loss | NA12145 | SNP array | SNP genotyping analysis | 15 |
| nssv468789 | copy number loss | NA10846 | SNP array | SNP genotyping analysis | 33 |
| nssv468790 | copy number loss | NA12003 | SNP array | SNP genotyping analysis | 16 |
| nssv468791 | copy number loss | NA10838 | SNP array | SNP genotyping analysis | 19 |
| nssv468792 | copy number loss | NA12236 | SNP array | SNP genotyping analysis | 9 |
| nssv468793 | copy number loss | NA10830 | SNP array | SNP genotyping analysis | 17 |
| nssv468794 | copy number loss | NA06994 | SNP array | SNP genotyping analysis | 22 |
| nssv468795 | copy number loss | NA07029 | SNP array | SNP genotyping analysis | 25 |
| nssv468797 | copy number loss | NA07022 | SNP array | SNP genotyping analysis | 7 |
| nssv468798 | copy number loss | NA07019 | SNP array | SNP genotyping analysis | 21 |
| nssv468799 | copy number loss | NA12144 | SNP array | SNP genotyping analysis | 17 |
| nssv468800 | copy number loss | NA10846 | SNP array | SNP genotyping analysis | 33 |
| nssv468801 | copy number loss | NA12145 | SNP array | SNP genotyping analysis | 15 |
| nssv468802 | copy number loss | NA10846 | SNP array | SNP genotyping analysis | 33 |
| nssv468803 | copy number loss | NA12249 | SNP array | SNP genotyping analysis | 16 |
| nssv468804 | copy number loss | NA10835 | SNP array | SNP genotyping analysis | 28 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv468805 | Remapped | Perfect | NC_000006.12:g.(?_ 78290181)_(7831664 7_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,290,181 | 78,316,647 |
| nssv468806 | Remapped | Perfect | NC_000006.12:g.(?_ 78290181)_(7831664 7_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,290,181 | 78,316,647 |
| nssv468808 | Remapped | Perfect | NC_000006.12:g.(?_ 78290181)_(7831664 7_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,290,181 | 78,316,647 |
| nssv468809 | Remapped | Perfect | NC_000006.12:g.(?_ 78290181)_(7831664 7_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,290,181 | 78,316,647 |
| nssv468786 | Remapped | Perfect | NC_000006.12:g.(?_ 78293361)_(7831696 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,293,361 | 78,316,969 |
| nssv468787 | Remapped | Perfect | NC_000006.12:g.(?_ 78293361)_(7831696 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,293,361 | 78,316,969 |
| nssv468788 | Remapped | Perfect | NC_000006.12:g.(?_ 78293361)_(7831696 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,293,361 | 78,316,969 |
| nssv468789 | Remapped | Perfect | NC_000006.12:g.(?_ 78293361)_(7831696 9_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,293,361 | 78,316,969 |
| nssv468790 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468791 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468792 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468793 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468794 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468795 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468797 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468798 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468799 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468800 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468801 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468802 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468803 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468804 | Remapped | Perfect | NC_000006.12:g.(?_ 78316647)_(7832265 2_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,316,647 | 78,322,652 |
| nssv468805 | Remapped | Perfect | NC_000006.11:g.(?_ 78999898)_(7902636 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,999,898 | 79,026,364 |
| nssv468806 | Remapped | Perfect | NC_000006.11:g.(?_ 78999898)_(7902636 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,999,898 | 79,026,364 |
| nssv468808 | Remapped | Perfect | NC_000006.11:g.(?_ 78999898)_(7902636 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,999,898 | 79,026,364 |
| nssv468809 | Remapped | Perfect | NC_000006.11:g.(?_ 78999898)_(7902636 4_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,999,898 | 79,026,364 |
| nssv468786 | Remapped | Perfect | NC_000006.11:g.(?_ 79003078)_(7902668 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,003,078 | 79,026,686 |
| nssv468787 | Remapped | Perfect | NC_000006.11:g.(?_ 79003078)_(7902668 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,003,078 | 79,026,686 |
| nssv468788 | Remapped | Perfect | NC_000006.11:g.(?_ 79003078)_(7902668 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,003,078 | 79,026,686 |
| nssv468789 | Remapped | Perfect | NC_000006.11:g.(?_ 79003078)_(7902668 6_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,003,078 | 79,026,686 |
| nssv468790 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468791 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468792 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468793 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468794 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468795 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468797 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468798 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468799 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468800 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468801 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468802 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468803 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468804 | Remapped | Perfect | NC_000006.11:g.(?_ 79026364)_(7903236 9_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 79,026,364 | 79,032,369 |
| nssv468805 | Submitted genomic | NC_000006.8:g.(?_7 8995494)_(79021960 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 78,995,494 | 79,021,960 | ||
| nssv468806 | Submitted genomic | NC_000006.8:g.(?_7 8995494)_(79021960 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 78,995,494 | 79,021,960 | ||
| nssv468808 | Submitted genomic | NC_000006.8:g.(?_7 8995494)_(79021960 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 78,995,494 | 79,021,960 | ||
| nssv468809 | Submitted genomic | NC_000006.8:g.(?_7 8995494)_(79021960 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 78,995,494 | 79,021,960 | ||
| nssv468786 | Submitted genomic | NC_000006.8:g.(?_7 8998674)_(79022282 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 78,998,674 | 79,022,282 | ||
| nssv468787 | Submitted genomic | NC_000006.8:g.(?_7 8998674)_(79022282 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 78,998,674 | 79,022,282 | ||
| nssv468788 | Submitted genomic | NC_000006.8:g.(?_7 8998674)_(79022282 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 78,998,674 | 79,022,282 | ||
| nssv468789 | Submitted genomic | NC_000006.8:g.(?_7 8998674)_(79022282 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 78,998,674 | 79,022,282 | ||
| nssv468790 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468791 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468792 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468793 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468794 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468795 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468797 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468798 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468799 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468800 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468801 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468802 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468803 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 | ||
| nssv468804 | Submitted genomic | NC_000006.8:g.(?_7 9021960)_(79027965 _?)del | NCBI34 (hg16) | NC_000006.8 | Chr6 | 79,021,960 | 79,027,965 |