Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv437980

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:34,489

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 450 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):3,352,894-3,387,382

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv437980	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	3,352,894	3,387,382
nsv437980	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	3,392,526	3,427,014
nsv437980	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000007.10	Chr7	3,136,864	3,171,352

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv468893	copy number loss	NA19222	SNP array	SNP genotyping analysis	10
nssv468894	copy number loss	NA19221	SNP array	SNP genotyping analysis	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv468893	Remapped	Perfect	NC_000007.14:g.(?_ 3352894)_(3387382_ ?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	3,352,894	3,387,382
nssv468894	Remapped	Perfect	NC_000007.14:g.(?_ 3352894)_(3387382_ ?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	3,352,894	3,387,382
nssv468893	Remapped	Perfect	NC_000007.13:g.(?_ 3392526)_(3427014_ ?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	3,392,526	3,427,014
nssv468894	Remapped	Perfect	NC_000007.13:g.(?_ 3392526)_(3427014_ ?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	3,392,526	3,427,014
nssv468893	Submitted genomic		NC_000007.10:g.(?_ 3136864)_(3171352_ ?)del	NCBI34 (hg16)		NC_000007.10	Chr7	3,136,864	3,171,352
nssv468894	Submitted genomic		NC_000007.10:g.(?_ 3136864)_(3171352_ ?)del	NCBI34 (hg16)		NC_000007.10	Chr7	3,136,864	3,171,352

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI