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dbVar

Database of genomic structural variation

nsv4379836

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:62,014

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 582 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):42,552,833-42,614,846

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4379836	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	42,552,833	42,614,846
nsv4379836	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000020.10	Chr20	41,181,473	41,243,486

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15618693	copy number loss	1-0171-002	SNP array	Genotyping	19
nssv15618967	copy number loss	1-0171-005	SNP array	Genotyping	28

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15618693	Remapped	Perfect	NC_000020.11:g.(?_ 42552833)_(4261484 6_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	42,552,833	42,614,846
nssv15618967	Remapped	Perfect	NC_000020.11:g.(?_ 42552833)_(4261484 6_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	42,552,833	42,614,846
nssv15618693	Submitted genomic		NC_000020.10:g.(?_ 41181473)_(4124348 6_?)del	GRCh37 (hg19)		NC_000020.10	Chr20	41,181,473	41,243,486
nssv15618967	Submitted genomic		NC_000020.10:g.(?_ 41181473)_(4124348 6_?)del	GRCh37 (hg19)		NC_000020.10	Chr20	41,181,473	41,243,486

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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