nsv4379967

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:33
Validation:Not tested
Clinical Assertions: No
Region Size:82,871

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 399 SVs from 64 studies. See in: genome view

Remapped(Score: Perfect):49,449,132-49,532,002

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4379967	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nsv4379967	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	49,914,804	49,997,674

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15616047	copy number loss	1-0144-002	SNP array	Genotyping	15
nssv15616201	copy number loss	1-0144-004	SNP array	Genotyping	25
nssv15616284	copy number loss	1-0144-005	SNP array	Genotyping	10
nssv15620456	copy number loss	1-0936-003	SNP array	Genotyping	18
nssv15620603	copy number loss	1-0975-003	SNP array	Genotyping	25
nssv15622792	copy number loss	1-0224-001	SNP array	Genotyping	29
nssv15630407	copy number loss	1-0611-003	SNP array	Genotyping	18
nssv15630820	copy number loss	1-0627-001	SNP array	Genotyping	14
nssv15630843	copy number loss	1-0627-003	SNP array	Genotyping	16
nssv15630859	copy number loss	1-0627-004	SNP array	Genotyping	23
nssv15631454	copy number loss	1-0627-007	SNP array	Genotyping	22
nssv15636241	copy number loss	14-0020-002	SNP array	Genotyping	28
nssv15636987	copy number loss	14-0020-004	SNP array	Genotyping	34
nssv15639303	copy number loss	14-0286-002	SNP array	Genotyping	20
nssv15641189	copy number loss	14-0286-001	SNP array	Genotyping	16
nssv15642607	copy number loss	15-1133-002	SNP array	Genotyping	14
nssv15644158	copy number loss	15-1133-001	SNP array	Genotyping	20
nssv15646701	copy number loss	2-0305-003	SNP array	Genotyping	17
nssv15654027	copy number loss	2-1689-003	SNP array	Genotyping	23
nssv15657028	copy number loss	3-0749-000	SNP array	Genotyping	25
nssv15657337	copy number loss	3-0380-002	SNP array	Genotyping	28
nssv15659205	copy number loss	4-0073-005	SNP array	Genotyping	19
nssv15659780	copy number loss	4-0073-002	SNP array	Genotyping	24
nssv15659804	copy number loss	4-0073-003	SNP array	Genotyping	21
nssv15659825	copy number loss	4-0073-004	SNP array	Genotyping	24
nssv15666742	copy number loss	7-0108-003	SNP array	Genotyping	17
nssv15683437	copy number loss	OCD124-B_188563	SNP array	Genotyping	28
nssv15683751	copy number loss	OCD122-S_1638	SNP array	Genotyping	18
nssv15687942	copy number loss	181227	SNP array	Genotyping	23
nssv15688356	copy number loss	OCD5-S_896111	SNP array	Genotyping	13
nssv15692822	copy number loss	OCD73-896563	SNP array	Genotyping	21
nssv15699672	copy number loss	213684	SNP array	Genotyping	22
nssv15702766	copy number loss	198045	SNP array	Genotyping	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15616047	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15616201	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15616284	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15620456	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15620603	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15622792	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15630407	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15630820	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15630843	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15630859	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15631454	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15636241	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15636987	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15639303	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15641189	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15642607	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15644158	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15646701	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15654027	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15657028	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15657337	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15659205	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15659780	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15659804	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15659825	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15666742	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15683437	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15683751	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15687942	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15688356	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15692822	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15699672	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15702766	Remapped	Perfect	NC_000001.11:g.(?_ 49449132)_(4953200 2_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	49,449,132	49,532,002
nssv15616047	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15616201	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15616284	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15620456	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15620603	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15622792	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15630407	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15630820	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15630843	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15630859	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15631454	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15636241	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15636987	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15639303	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15641189	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15642607	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15644158	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15646701	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15654027	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15657028	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15657337	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15659205	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15659780	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15659804	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15659825	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15666742	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15683437	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15683751	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15687942	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15688356	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15692822	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15699672	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674
nssv15702766	Submitted genomic		NC_000001.10:g.(?_ 49914804)_(4999767 4_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	49,914,804	49,997,674

dbVar

Database of genomic structural variation

nsv4379967

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant