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dbVar

Database of genomic structural variation

nsv4380279

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:31,307

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1072 SVs from 93 studies. See in: genome view

Remapped(Score: Perfect):57,184,135-57,215,441

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4380279	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	57,184,135	57,215,441
nsv4380279	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000013.10	Chr13	57,758,269	57,789,575

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15631777	copy number loss	10-0015-002	SNP array	Genotyping	17
nssv15644383	copy number loss	16-1015-003	SNP array	Genotyping	26

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15631777	Remapped	Perfect	NC_000013.11:g.(?_ 57184135)_(5721544 1_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	57,184,135	57,215,441
nssv15644383	Remapped	Perfect	NC_000013.11:g.(?_ 57184135)_(5721544 1_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	57,184,135	57,215,441
nssv15631777	Submitted genomic		NC_000013.10:g.(?_ 57758269)_(5778957 5_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	57,758,269	57,789,575
nssv15644383	Submitted genomic		NC_000013.10:g.(?_ 57758269)_(5778957 5_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	57,758,269	57,789,575

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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