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dbVar

Database of genomic structural variation

nsv4380358

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:30,174

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 373 SVs from 58 studies. See in: genome view

Remapped(Score: Perfect):63,869,747-63,899,920

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4380358	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	63,869,747	63,899,920
nsv4380358	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000017.10	Chr17	61,947,107	61,977,280

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15612607	copy number loss	1-0703-003	SNP array	Genotyping	27
nssv15639576	copy number loss	14-0260-002	SNP array	Genotyping	13
nssv15644682	copy number loss	16-1000-003	SNP array	Genotyping	23
nssv15665622	copy number loss	7-0081-003	SNP array	Genotyping	21
nssv15694132	copy number loss	220321	SNP array	Genotyping	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15612607	Remapped	Perfect	NC_000017.11:g.(?_ 63869747)_(6389992 0_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	63,869,747	63,899,920
nssv15639576	Remapped	Perfect	NC_000017.11:g.(?_ 63869747)_(6389992 0_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	63,869,747	63,899,920
nssv15644682	Remapped	Perfect	NC_000017.11:g.(?_ 63869747)_(6389992 0_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	63,869,747	63,899,920
nssv15665622	Remapped	Perfect	NC_000017.11:g.(?_ 63869747)_(6389992 0_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	63,869,747	63,899,920
nssv15694132	Remapped	Perfect	NC_000017.11:g.(?_ 63869747)_(6389992 0_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	63,869,747	63,899,920
nssv15612607	Submitted genomic		NC_000017.10:g.(?_ 61947107)_(6197728 0_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	61,947,107	61,977,280
nssv15639576	Submitted genomic		NC_000017.10:g.(?_ 61947107)_(6197728 0_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	61,947,107	61,977,280
nssv15644682	Submitted genomic		NC_000017.10:g.(?_ 61947107)_(6197728 0_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	61,947,107	61,977,280
nssv15665622	Submitted genomic		NC_000017.10:g.(?_ 61947107)_(6197728 0_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	61,947,107	61,977,280
nssv15694132	Submitted genomic		NC_000017.10:g.(?_ 61947107)_(6197728 0_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	61,947,107	61,977,280

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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