nsv4380512

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:13
Validation:Not tested
Clinical Assertions: No
Region Size:32,441

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 395 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):89,337,785-89,370,225

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4380512	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nsv4380512	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	89,386,935	89,419,375

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15634164	copy number loss	10-1155-004	SNP array	Genotyping	21
nssv15636722	copy number loss	14-0024-002	SNP array	Genotyping	28
nssv15642927	copy number loss	15-1130-001	SNP array	Genotyping	16
nssv15644223	copy number loss	16-1004-001	SNP array	Genotyping	23
nssv15644265	copy number loss	16-1004-004	SNP array	Genotyping	10
nssv15645866	copy number loss	2-0285-001	SNP array	Genotyping	19
nssv15649861	copy number loss	2-1359-001	SNP array	Genotyping	15
nssv15651489	copy number loss	2-1437-003	SNP array	Genotyping	21
nssv15665964	copy number loss	5-0025-003	SNP array	Genotyping	27
nssv15671302	copy number loss	7-0280-004	SNP array	Genotyping	17
nssv15672632	copy number loss	9-0011-003	SNP array	Genotyping	24
nssv15697442	copy number loss	159011	SNP array	Genotyping	22
nssv15702754	copy number loss	198042	SNP array	Genotyping	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15634164	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15636722	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15642927	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15644223	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15644265	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15645866	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15649861	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15651489	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15665964	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15671302	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15672632	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15697442	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15702754	Remapped	Perfect	NC_000003.12:g.(?_ 89337785)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,337,785	89,370,225
nssv15634164	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15636722	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15642927	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15644223	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15644265	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15645866	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15649861	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15651489	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15665964	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15671302	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15672632	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15697442	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375
nssv15702754	Submitted genomic		NC_000003.11:g.(?_ 89386935)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,386,935	89,419,375

dbVar

Database of genomic structural variation

nsv4380512

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant