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dbVar

Database of genomic structural variation

nsv4381142

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:47,838

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 720 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):128,657,823-128,705,660

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4381142	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	128,657,823	128,705,660
nsv4381142	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	128,376,666	128,424,503

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15628286	copy number gain	1-0509-003	SNP array	Genotyping	16
nssv15628311	copy number gain	1-0509-002	SNP array	Genotyping	14
nssv15656740	copy number gain	3-0508-000	SNP array	Genotyping	20
nssv15660743	copy number gain	5-0061-003	SNP array	Genotyping	14
nssv15674183	copy number gain	9-0021-003	SNP array	Genotyping	18
nssv15700229	copy number gain	195904	SNP array	Genotyping	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15628286	Remapped	Perfect	NC_000003.12:g.(?_ 128657823)_(128705 660_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	128,657,823	128,705,660
nssv15628311	Remapped	Perfect	NC_000003.12:g.(?_ 128657823)_(128705 660_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	128,657,823	128,705,660
nssv15656740	Remapped	Perfect	NC_000003.12:g.(?_ 128657823)_(128705 660_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	128,657,823	128,705,660
nssv15660743	Remapped	Perfect	NC_000003.12:g.(?_ 128657823)_(128705 660_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	128,657,823	128,705,660
nssv15674183	Remapped	Perfect	NC_000003.12:g.(?_ 128657823)_(128705 660_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	128,657,823	128,705,660
nssv15700229	Remapped	Perfect	NC_000003.12:g.(?_ 128657823)_(128705 660_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	128,657,823	128,705,660
nssv15628286	Submitted genomic		NC_000003.11:g.(?_ 128376666)_(128424 503_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	128,376,666	128,424,503
nssv15628311	Submitted genomic		NC_000003.11:g.(?_ 128376666)_(128424 503_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	128,376,666	128,424,503
nssv15656740	Submitted genomic		NC_000003.11:g.(?_ 128376666)_(128424 503_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	128,376,666	128,424,503
nssv15660743	Submitted genomic		NC_000003.11:g.(?_ 128376666)_(128424 503_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	128,376,666	128,424,503
nssv15674183	Submitted genomic		NC_000003.11:g.(?_ 128376666)_(128424 503_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	128,376,666	128,424,503
nssv15700229	Submitted genomic		NC_000003.11:g.(?_ 128376666)_(128424 503_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	128,376,666	128,424,503

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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