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dbVar

Database of genomic structural variation

nsv4381178

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:250,281

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1956 SVs from 100 studies. See in: genome view

Remapped(Score: Perfect):167,932,628-168,182,908

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4381178	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	167,932,628	168,182,908
nsv4381178	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	168,333,308	168,583,588

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15621689	copy number gain	1-1008-002	SNP array	Genotyping	17
nssv15624802	copy number gain	1-0403-003	SNP array	Genotyping	31
nssv15624832	copy number gain	1-0403-004	SNP array	Genotyping	32
nssv15628125	copy number gain	1-0534-006	SNP array	Genotyping	19
nssv15631680	copy number gain	10-0013-001	SNP array	Genotyping	25
nssv15661305	copy number gain	5-0066-003	SNP array	Genotyping	27
nssv15662922	copy number gain	6-0379-004	SNP array	Genotyping	27

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15621689	Remapped	Perfect	NC_000006.12:g.(?_ 167932628)_(168182 908_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	167,932,628	168,182,908
nssv15624802	Remapped	Perfect	NC_000006.12:g.(?_ 167932628)_(168182 908_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	167,932,628	168,182,908
nssv15624832	Remapped	Perfect	NC_000006.12:g.(?_ 167932628)_(168182 908_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	167,932,628	168,182,908
nssv15628125	Remapped	Perfect	NC_000006.12:g.(?_ 167932628)_(168182 908_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	167,932,628	168,182,908
nssv15631680	Remapped	Perfect	NC_000006.12:g.(?_ 167932628)_(168182 908_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	167,932,628	168,182,908
nssv15661305	Remapped	Perfect	NC_000006.12:g.(?_ 167932628)_(168182 908_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	167,932,628	168,182,908
nssv15662922	Remapped	Perfect	NC_000006.12:g.(?_ 167932628)_(168182 908_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	167,932,628	168,182,908
nssv15621689	Submitted genomic		NC_000006.11:g.(?_ 168333308)_(168583 588_?)dup	GRCh37 (hg19)		NC_000006.11	Chr6	168,333,308	168,583,588
nssv15624802	Submitted genomic		NC_000006.11:g.(?_ 168333308)_(168583 588_?)dup	GRCh37 (hg19)		NC_000006.11	Chr6	168,333,308	168,583,588
nssv15624832	Submitted genomic		NC_000006.11:g.(?_ 168333308)_(168583 588_?)dup	GRCh37 (hg19)		NC_000006.11	Chr6	168,333,308	168,583,588
nssv15628125	Submitted genomic		NC_000006.11:g.(?_ 168333308)_(168583 588_?)dup	GRCh37 (hg19)		NC_000006.11	Chr6	168,333,308	168,583,588
nssv15631680	Submitted genomic		NC_000006.11:g.(?_ 168333308)_(168583 588_?)dup	GRCh37 (hg19)		NC_000006.11	Chr6	168,333,308	168,583,588
nssv15661305	Submitted genomic		NC_000006.11:g.(?_ 168333308)_(168583 588_?)dup	GRCh37 (hg19)		NC_000006.11	Chr6	168,333,308	168,583,588
nssv15662922	Submitted genomic		NC_000006.11:g.(?_ 168333308)_(168583 588_?)dup	GRCh37 (hg19)		NC_000006.11	Chr6	168,333,308	168,583,588

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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