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dbVar

Database of genomic structural variation

nsv4381351

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:179,914

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1357 SVs from 95 studies. See in: genome view

Remapped(Score: Perfect):136,670,279-136,850,192

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4381351	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nsv4381351	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000008.10	Chr8	137,682,522	137,862,435

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15612470	copy number loss	1-0672-003	SNP array	Genotyping	18
nssv15651395	copy number loss	2-1428-003	SNP array	Genotyping	21
nssv15661486	copy number loss	5-0110-002	SNP array	Genotyping	22
nssv15661859	copy number loss	4-0042-001	SNP array	Genotyping	16
nssv15661872	copy number loss	4-0042-003	SNP array	Genotyping	15
nssv15681576	copy number loss	240253S	SNP array	Genotyping	27
nssv15691075	copy number loss	OCD25-S_896501	SNP array	Genotyping	27
nssv15696858	copy number loss	115483	SNP array	Genotyping	16

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15612470	Remapped	Perfect	NC_000008.11:g.(?_ 136670279)_(136850 192_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nssv15651395	Remapped	Perfect	NC_000008.11:g.(?_ 136670279)_(136850 192_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nssv15661486	Remapped	Perfect	NC_000008.11:g.(?_ 136670279)_(136850 192_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nssv15661859	Remapped	Perfect	NC_000008.11:g.(?_ 136670279)_(136850 192_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nssv15661872	Remapped	Perfect	NC_000008.11:g.(?_ 136670279)_(136850 192_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nssv15681576	Remapped	Perfect	NC_000008.11:g.(?_ 136670279)_(136850 192_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nssv15691075	Remapped	Perfect	NC_000008.11:g.(?_ 136670279)_(136850 192_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nssv15696858	Remapped	Perfect	NC_000008.11:g.(?_ 136670279)_(136850 192_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	136,670,279	136,850,192
nssv15612470	Submitted genomic		NC_000008.10:g.(?_ 137682522)_(137862 435_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	137,682,522	137,862,435
nssv15651395	Submitted genomic		NC_000008.10:g.(?_ 137682522)_(137862 435_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	137,682,522	137,862,435
nssv15661486	Submitted genomic		NC_000008.10:g.(?_ 137682522)_(137862 435_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	137,682,522	137,862,435
nssv15661859	Submitted genomic		NC_000008.10:g.(?_ 137682522)_(137862 435_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	137,682,522	137,862,435
nssv15661872	Submitted genomic		NC_000008.10:g.(?_ 137682522)_(137862 435_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	137,682,522	137,862,435
nssv15681576	Submitted genomic		NC_000008.10:g.(?_ 137682522)_(137862 435_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	137,682,522	137,862,435
nssv15691075	Submitted genomic		NC_000008.10:g.(?_ 137682522)_(137862 435_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	137,682,522	137,862,435
nssv15696858	Submitted genomic		NC_000008.10:g.(?_ 137682522)_(137862 435_?)del	GRCh37 (hg19)		NC_000008.10	Chr8	137,682,522	137,862,435

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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