Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv438136

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:425,875

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 942 SVs from 64 studies. See in: genome view

Remapped(Score: Perfect):67,018,503-67,444,377

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv438136	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	67,018,503	67,444,377
nsv438136	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	66,238,345	66,664,219
nsv438136	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000023.7	ChrX	65,105,136	65,531,010

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv470169	copy number loss	NA18501	SNP array	SNP genotyping analysis	19
nssv470170	copy number loss	NA18500	SNP array	SNP genotyping analysis	35
nssv470171	copy number loss	NA18502	SNP array	SNP genotyping analysis	15
nssv470172	copy number loss	NA18500	SNP array	SNP genotyping analysis	35
nssv470173	copy number loss	NA18504	SNP array	SNP genotyping analysis	18
nssv470175	copy number loss	NA18503	SNP array	SNP genotyping analysis	30

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv470169	Remapped	Perfect	NC_000023.11:g.(?_ 67018503)_(6744437 7_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	67,018,503	67,444,377
nssv470170	Remapped	Perfect	NC_000023.11:g.(?_ 67018503)_(6744437 7_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	67,018,503	67,444,377
nssv470171	Remapped	Perfect	NC_000023.11:g.(?_ 67018503)_(6744437 7_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	67,018,503	67,444,377
nssv470172	Remapped	Perfect	NC_000023.11:g.(?_ 67018503)_(6744437 7_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	67,018,503	67,444,377
nssv470173	Remapped	Perfect	NC_000023.11:g.(?_ 67018503)_(6744437 7_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	67,018,503	67,444,377
nssv470175	Remapped	Perfect	NC_000023.11:g.(?_ 67018503)_(6744437 7_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	67,018,503	67,444,377
nssv470169	Remapped	Perfect	NC_000023.10:g.(?_ 66238345)_(6666421 9_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	66,238,345	66,664,219
nssv470170	Remapped	Perfect	NC_000023.10:g.(?_ 66238345)_(6666421 9_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	66,238,345	66,664,219
nssv470171	Remapped	Perfect	NC_000023.10:g.(?_ 66238345)_(6666421 9_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	66,238,345	66,664,219
nssv470172	Remapped	Perfect	NC_000023.10:g.(?_ 66238345)_(6666421 9_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	66,238,345	66,664,219
nssv470173	Remapped	Perfect	NC_000023.10:g.(?_ 66238345)_(6666421 9_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	66,238,345	66,664,219
nssv470175	Remapped	Perfect	NC_000023.10:g.(?_ 66238345)_(6666421 9_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	66,238,345	66,664,219
nssv470169	Submitted genomic		NC_000023.7:g.(?_6 5105136)_(65531010 _?)del	NCBI34 (hg16)		NC_000023.7	ChrX	65,105,136	65,531,010
nssv470170	Submitted genomic		NC_000023.7:g.(?_6 5105136)_(65531010 _?)del	NCBI34 (hg16)		NC_000023.7	ChrX	65,105,136	65,531,010
nssv470171	Submitted genomic		NC_000023.7:g.(?_6 5105136)_(65531010 _?)del	NCBI34 (hg16)		NC_000023.7	ChrX	65,105,136	65,531,010
nssv470172	Submitted genomic		NC_000023.7:g.(?_6 5105136)_(65531010 _?)del	NCBI34 (hg16)		NC_000023.7	ChrX	65,105,136	65,531,010
nssv470173	Submitted genomic		NC_000023.7:g.(?_6 5105136)_(65531010 _?)del	NCBI34 (hg16)		NC_000023.7	ChrX	65,105,136	65,531,010
nssv470175	Submitted genomic		NC_000023.7:g.(?_6 5105136)_(65531010 _?)del	NCBI34 (hg16)		NC_000023.7	ChrX	65,105,136	65,531,010

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI