nsv4382318
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:21
- Validation:Not tested
- Clinical Assertions: No
- Region Size:154,352
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 919 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 920 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4382318 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nsv4382318 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15612717 | copy number loss | 1-0645-003 | SNP array | Genotyping | 15 |
| nssv15612943 | copy number loss | 1-0692-003 | SNP array | Genotyping | 17 |
| nssv15613049 | copy number loss | 1-0662-003 | SNP array | Genotyping | 16 |
| nssv15613231 | copy number loss | 1-0679-003 | SNP array | Genotyping | 21 |
| nssv15613373 | copy number loss | 1-0701-003 | SNP array | Genotyping | 20 |
| nssv15613842 | copy number loss | 1-0707-003 | SNP array | Genotyping | 13 |
| nssv15617885 | copy number loss | 1-0875-003 | SNP array | Genotyping | 25 |
| nssv15624428 | copy number loss | 1-0045-002 | SNP array | Genotyping | 24 |
| nssv15633055 | copy number loss | 10-1104-002 | SNP array | Genotyping | 24 |
| nssv15633072 | copy number loss | 10-1104-003 | SNP array | Genotyping | 23 |
| nssv15635640 | copy number loss | 11-0048-003 | SNP array | Genotyping | 35 |
| nssv15646562 | copy number loss | 2-1268-002 | SNP array | Genotyping | 29 |
| nssv15648205 | copy number loss | 2-1235-002 | SNP array | Genotyping | 23 |
| nssv15651879 | copy number loss | 2-1579-003 | SNP array | Genotyping | 18 |
| nssv15653815 | copy number loss | 2-1567-003 | SNP array | Genotyping | 20 |
| nssv15663544 | copy number loss | 5-0134-003 | SNP array | Genotyping | 24 |
| nssv15664882 | copy number loss | 6-0451-003 | SNP array | Genotyping | 28 |
| nssv15666338 | copy number loss | 7-0069-003 | SNP array | Genotyping | 21 |
| nssv15668282 | copy number loss | 7-0187-003 | SNP array | Genotyping | 31 |
| nssv15674006 | copy number loss | 9-0030-002 | SNP array | Genotyping | 24 |
| nssv15694733 | copy number loss | 216093 | SNP array | Genotyping | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15612717 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15612943 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15613049 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15613231 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15613373 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15613842 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15617885 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15624428 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15633055 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15633072 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15635640 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15646562 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15648205 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15651879 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15653815 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15663544 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15664882 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15666338 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15668282 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15674006 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15694733 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2030419 6_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,304,196 |
| nssv15612717 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15612943 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15613049 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15613231 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15613373 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15613842 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15617885 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15624428 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15633055 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15633072 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15635640 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15646562 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15648205 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15651879 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15653815 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15663544 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15664882 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15666338 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15668282 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15674006 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 | ||
| nssv15694733 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22466082 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,466,082 |