Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv4382551

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:48,971

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 744 SVs from 89 studies. See in: genome view

Remapped(Score: Perfect):19,591,676-19,640,646

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4382551	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	19,591,676	19,640,646
nsv4382551	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000017.10	Chr17	19,494,989	19,543,959

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15615094	copy number loss	1-0747-003	SNP array	Genotyping	19
nssv15623743	copy number loss	1-0236-004	SNP array	Genotyping	25
nssv15684781	copy number loss	OCD155-dt-1239(190116)	SNP array	Genotyping	16
nssv15686144	copy number loss	OCD2-B_LK-1286	SNP array	Genotyping	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15615094	Remapped	Perfect	NC_000017.11:g.(?_ 19591676)_(1964064 6_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	19,591,676	19,640,646
nssv15623743	Remapped	Perfect	NC_000017.11:g.(?_ 19591676)_(1964064 6_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	19,591,676	19,640,646
nssv15684781	Remapped	Perfect	NC_000017.11:g.(?_ 19591676)_(1964064 6_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	19,591,676	19,640,646
nssv15686144	Remapped	Perfect	NC_000017.11:g.(?_ 19591676)_(1964064 6_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	19,591,676	19,640,646
nssv15615094	Submitted genomic		NC_000017.10:g.(?_ 19494989)_(1954395 9_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	19,494,989	19,543,959
nssv15623743	Submitted genomic		NC_000017.10:g.(?_ 19494989)_(1954395 9_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	19,494,989	19,543,959
nssv15684781	Submitted genomic		NC_000017.10:g.(?_ 19494989)_(1954395 9_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	19,494,989	19,543,959
nssv15686144	Submitted genomic		NC_000017.10:g.(?_ 19494989)_(1954395 9_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	19,494,989	19,543,959

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI