nsv438296
- Organism: Homo sapiens
- Study:nstd20 (McCarroll et al. 2006)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI34 (hg16)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:98,884
- Publication(s):McCarroll et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 735 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 735 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 2 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv438296 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 68,355,443 | 68,454,326 |
| nsv438296 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 66,022,680 | 66,121,563 |
| nsv438296 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000018.7 | Chr18 | 64,171,649 | 64,270,532 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv470726 | copy number loss | NA19100 | SNP array | SNP genotyping analysis | 26 |
| nssv470727 | copy number loss | NA19098 | SNP array | SNP genotyping analysis | 17 |
| nssv470731 | copy number loss | NA19098 | SNP array | SNP genotyping analysis | 17 |
| nssv470732 | copy number loss | NA19100 | SNP array | SNP genotyping analysis | 26 |
| nssv470728 | copy number loss | NA19098 | SNP array | SNP genotyping analysis | 17 |
| nssv470730 | copy number loss | NA19100 | SNP array | SNP genotyping analysis | 26 |
| nssv470733 | copy number loss | NA19098 | SNP array | SNP genotyping analysis | 17 |
| nssv470734 | copy number loss | NA19100 | SNP array | SNP genotyping analysis | 26 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv470726 | Remapped | Perfect | NC_000018.10:g.(?_ 68355443)_(6845432 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 68,355,443 | 68,454,326 |
| nssv470727 | Remapped | Perfect | NC_000018.10:g.(?_ 68355443)_(6845432 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 68,355,443 | 68,454,326 |
| nssv470731 | Remapped | Perfect | NC_000018.10:g.(?_ 68377128)_(6839377 1_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 68,377,128 | 68,393,771 |
| nssv470732 | Remapped | Perfect | NC_000018.10:g.(?_ 68377128)_(6839377 1_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 68,377,128 | 68,393,771 |
| nssv470728 | Remapped | Perfect | NC_000018.10:g.(?_ 68406538)_(6844494 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 68,406,538 | 68,444,943 |
| nssv470730 | Remapped | Perfect | NC_000018.10:g.(?_ 68406538)_(6844494 3_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 68,406,538 | 68,444,943 |
| nssv470733 | Remapped | Perfect | NC_000018.10:g.(?_ 68424979)_(6844041 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 68,424,979 | 68,440,416 |
| nssv470734 | Remapped | Perfect | NC_000018.10:g.(?_ 68424979)_(6844041 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 68,424,979 | 68,440,416 |
| nssv470726 | Remapped | Perfect | NC_000018.9:g.(?_6 6022680)_(66121563 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,022,680 | 66,121,563 |
| nssv470727 | Remapped | Perfect | NC_000018.9:g.(?_6 6022680)_(66121563 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,022,680 | 66,121,563 |
| nssv470731 | Remapped | Perfect | NC_000018.9:g.(?_6 6044365)_(66061008 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,044,365 | 66,061,008 |
| nssv470732 | Remapped | Perfect | NC_000018.9:g.(?_6 6044365)_(66061008 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,044,365 | 66,061,008 |
| nssv470728 | Remapped | Perfect | NC_000018.9:g.(?_6 6073775)_(66112180 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,073,775 | 66,112,180 |
| nssv470730 | Remapped | Perfect | NC_000018.9:g.(?_6 6073775)_(66112180 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,073,775 | 66,112,180 |
| nssv470733 | Remapped | Perfect | NC_000018.9:g.(?_6 6092216)_(66107653 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,092,216 | 66,107,653 |
| nssv470734 | Remapped | Perfect | NC_000018.9:g.(?_6 6092216)_(66107653 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 66,092,216 | 66,107,653 |
| nssv470726 | Submitted genomic | NC_000018.7:g.(?_6 4171649)_(64270532 _?)del | NCBI34 (hg16) | NC_000018.7 | Chr18 | 64,171,649 | 64,270,532 | ||
| nssv470727 | Submitted genomic | NC_000018.7:g.(?_6 4171649)_(64270532 _?)del | NCBI34 (hg16) | NC_000018.7 | Chr18 | 64,171,649 | 64,270,532 | ||
| nssv470731 | Submitted genomic | NC_000018.7:g.(?_6 4193334)_(64209977 _?)del | NCBI34 (hg16) | NC_000018.7 | Chr18 | 64,193,334 | 64,209,977 | ||
| nssv470732 | Submitted genomic | NC_000018.7:g.(?_6 4193334)_(64209977 _?)del | NCBI34 (hg16) | NC_000018.7 | Chr18 | 64,193,334 | 64,209,977 | ||
| nssv470728 | Submitted genomic | NC_000018.7:g.(?_6 4222744)_(64261149 _?)del | NCBI34 (hg16) | NC_000018.7 | Chr18 | 64,222,744 | 64,261,149 | ||
| nssv470730 | Submitted genomic | NC_000018.7:g.(?_6 4222744)_(64261149 _?)del | NCBI34 (hg16) | NC_000018.7 | Chr18 | 64,222,744 | 64,261,149 | ||
| nssv470733 | Submitted genomic | NC_000018.7:g.(?_6 4241185)_(64256622 _?)del | NCBI34 (hg16) | NC_000018.7 | Chr18 | 64,241,185 | 64,256,622 | ||
| nssv470734 | Submitted genomic | NC_000018.7:g.(?_6 4241185)_(64256622 _?)del | NCBI34 (hg16) | NC_000018.7 | Chr18 | 64,241,185 | 64,256,622 |