nsv4382965
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:21
- Validation:Not tested
- Clinical Assertions: No
- Region Size:55,058
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 528 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 589 SVs from 77 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv4382965 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nsv4382965 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv15616495 | copy number loss | 1-0846-003 | SNP array | Genotyping | 26 |
nssv15617346 | copy number loss | 1-0841-003 | SNP array | Genotyping | 24 |
nssv15617733 | copy number loss | 1-0838-003 | SNP array | Genotyping | 27 |
nssv15624125 | copy number loss | 1-0255-003 | SNP array | Genotyping | 22 |
nssv15625119 | copy number loss | 1-0382-003 | SNP array | Genotyping | 22 |
nssv15625135 | copy number loss | 1-0375-003 | SNP array | Genotyping | 15 |
nssv15637469 | copy number loss | 14-0044-001 | SNP array | Genotyping | 16 |
nssv15637608 | copy number gain | 14-0130-002 | SNP array | Genotyping | 19 |
nssv15641067 | copy number loss | 14-0349-004 | SNP array | Genotyping | 21 |
nssv15641519 | copy number loss | 14-0356-001 | SNP array | Genotyping | 23 |
nssv15654020 | copy number loss | 2-1688-003 | SNP array | Genotyping | 14 |
nssv15655085 | copy number loss | 2-1659-003 | SNP array | Genotyping | 23 |
nssv15658774 | copy number loss | 3-0604-000 | SNP array | Genotyping | 16 |
nssv15659719 | copy number loss | 4-0070-003 | SNP array | Genotyping | 24 |
nssv15666912 | copy number loss | 7-0142-003 | SNP array | Genotyping | 23 |
nssv15667015 | copy number loss | 7-0148-003 | SNP array | Genotyping | 22 |
nssv15677135 | copy number loss | 219364 | SNP array | Genotyping | 22 |
nssv15679987 | copy number gain | 229188S | SNP array | Genotyping | 30 |
nssv15682051 | copy number loss | 218107 | SNP array | Genotyping | 17 |
nssv15698718 | copy number loss | 238656 | SNP array | Genotyping | 19 |
nssv15701648 | copy number loss | 224904 | SNP array | Genotyping | 21 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv15616495 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15617346 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15617733 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15624125 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15625119 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15625135 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15637469 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15637608 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15641067 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15641519 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15654020 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15655085 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15658774 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15659719 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15666912 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15667015 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15677135 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15679987 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15682051 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15698718 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15701648 | Remapped | Pass | NC_000002.12:g.(?_ 97490656)_(9754571 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 97,490,656 | 97,545,713 |
nssv15616495 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15617346 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15617733 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15624125 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15625119 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15625135 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15637469 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15637608 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15641067 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15641519 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15654020 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15655085 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15658774 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15659719 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15666912 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15667015 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15677135 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15679987 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15682051 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15698718 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 | ||
nssv15701648 | Submitted genomic | NC_000002.11:g.(?_ 98063371)_(9816217 6_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 98,063,371 | 98,162,176 |