nsv4382990
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:27,235
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 310 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 310 SVs from 74 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4382990 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nsv4382990 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15611613 | copy number loss | 1-0649-003 | SNP array | Genotyping | 17 |
| nssv15613716 | copy number loss | 1-0718-003 | SNP array | Genotyping | 35 |
| nssv15616648 | copy number loss | 1-0864-003 | SNP array | Genotyping | 20 |
| nssv15616668 | copy number loss | 1-0864-004 | SNP array | Genotyping | 18 |
| nssv15617223 | copy number gain | 1-0815-003 | SNP array | Genotyping | 15 |
| nssv15620780 | copy number gain | 1-1002-003 | SNP array | Genotyping | 26 |
| nssv15626635 | copy number loss | 1-0447-002 | SNP array | Genotyping | 22 |
| nssv15631221 | copy number loss | 1-0092-002 | SNP array | Genotyping | 30 |
| nssv15656264 | copy number loss | 3-0711-000 | SNP array | Genotyping | 17 |
| nssv15666503 | copy number gain | 7-0088-003 | SNP array | Genotyping | 23 |
| nssv15667335 | copy number loss | 7-0157-004 | SNP array | Genotyping | 32 |
| nssv15675759 | copy number loss | 172009 | SNP array | Genotyping | 26 |
| nssv15679875 | copy number loss | 211146 | SNP array | Genotyping | 24 |
| nssv15695735 | copy number loss | OCD99-1551 | SNP array | Genotyping | 19 |
| nssv15700387 | copy number loss | 205282 | SNP array | Genotyping | 25 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15611613 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15613716 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15616648 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15616668 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15617223 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15620780 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15626635 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15631221 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15656264 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15666503 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15667335 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15675759 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15679875 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15695735 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15700387 | Remapped | Perfect | NC_000009.12:g.(?_ 113092073)_(113119 307_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 113,092,073 | 113,119,307 |
| nssv15611613 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15613716 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15616648 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15616668 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15617223 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)dup | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15620780 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)dup | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15626635 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15631221 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15656264 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15666503 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)dup | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15667335 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15675759 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15679875 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15695735 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 | ||
| nssv15700387 | Submitted genomic | NC_000009.11:g.(?_ 115854353)_(115881 587_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 115,854,353 | 115,881,587 |