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dbVar

Database of genomic structural variation

nsv4383047

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:50,156

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 815 SVs from 80 studies. See in: genome view

Remapped(Score: Perfect):97,707,874-97,758,029

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4383047	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	97,707,874	97,758,029
nsv4383047	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	97,043,578	97,093,733

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15637453	copy number loss	13-0095-003	SNP array	Genotyping	16
nssv15638582	copy number loss	13-0095-004	SNP array	Genotyping	24
nssv15651323	copy number loss	2-1371-001	SNP array	Genotyping	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15637453	Remapped	Perfect	NC_000005.10:g.(?_ 97707874)_(9775802 9_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	97,707,874	97,758,029
nssv15638582	Remapped	Perfect	NC_000005.10:g.(?_ 97707874)_(9775802 9_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	97,707,874	97,758,029
nssv15651323	Remapped	Perfect	NC_000005.10:g.(?_ 97707874)_(9775802 9_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	97,707,874	97,758,029
nssv15637453	Submitted genomic		NC_000005.9:g.(?_9 7043578)_(97093733 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	97,043,578	97,093,733
nssv15638582	Submitted genomic		NC_000005.9:g.(?_9 7043578)_(97093733 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	97,043,578	97,093,733
nssv15651323	Submitted genomic		NC_000005.9:g.(?_9 7043578)_(97093733 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	97,043,578	97,093,733

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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