nsv4383655
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:30
- Validation:Not tested
- Clinical Assertions: No
- Region Size:43,975
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 696 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 710 SVs from 69 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4383655 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nsv4383655 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15615430 | copy number loss | 1-0772-003 | SNP array | Genotyping | 18 |
| nssv15616510 | copy number loss | 1-0847-003 | SNP array | Genotyping | 13 |
| nssv15620667 | copy number loss | 1-0982-003 | SNP array | Genotyping | 27 |
| nssv15621450 | copy number loss | 1-1017-003 | SNP array | Genotyping | 20 |
| nssv15627553 | copy number loss | 1-0489-002 | SNP array | Genotyping | 16 |
| nssv15627773 | copy number loss | 1-0543-001 | SNP array | Genotyping | 21 |
| nssv15628087 | copy number loss | 1-0534-005 | SNP array | Genotyping | 21 |
| nssv15629356 | copy number loss | 1-0541-005 | SNP array | Genotyping | 17 |
| nssv15631310 | copy number loss | 1-0621-003 | SNP array | Genotyping | 19 |
| nssv15636680 | copy number loss | 13-0150-003 | SNP array | Genotyping | 20 |
| nssv15644674 | copy number loss | 16-1000-003 | SNP array | Genotyping | 23 |
| nssv15649154 | copy number loss | 2-1258-002 | SNP array | Genotyping | 14 |
| nssv15652146 | copy number loss | 2-1522-002 | SNP array | Genotyping | 18 |
| nssv15652238 | copy number loss | 2-1550-002 | SNP array | Genotyping | 24 |
| nssv15654283 | copy number loss | 2-1593-001 | SNP array | Genotyping | 19 |
| nssv15656031 | copy number loss | 3-0556-000 | SNP array | Genotyping | 17 |
| nssv15658682 | copy number loss | 3-0546-000 | SNP array | Genotyping | 15 |
| nssv15659179 | copy number loss | 4-0068-003 | SNP array | Genotyping | 16 |
| nssv15662364 | copy number loss | 4-0083-003 | SNP array | Genotyping | 20 |
| nssv15662444 | copy number loss | 5-0045-003 | SNP array | Genotyping | 22 |
| nssv15670918 | copy number loss | 7-0286-003 | SNP array | Genotyping | 20 |
| nssv15683929 | copy number loss | OCD137-0625-2972-2 | SNP array | Genotyping | 28 |
| nssv15687683 | copy number loss | OCD173-AH-364_1774 | SNP array | Genotyping | 19 |
| nssv15687888 | copy number loss | OCD51-S_0625-7445-3 | SNP array | Genotyping | 23 |
| nssv15688185 | copy number loss | 209350 | SNP array | Genotyping | 25 |
| nssv15689697 | copy number loss | OCD1122-896053 | SNP array | Genotyping | 22 |
| nssv15693938 | copy number loss | OCD97-1400-2 | SNP array | Genotyping | 19 |
| nssv15698237 | copy number loss | 90785 | SNP array | Genotyping | 20 |
| nssv15699246 | copy number loss | 224900 | SNP array | Genotyping | 15 |
| nssv15701886 | copy number loss | 168209 | SNP array | Genotyping | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15615430 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15616510 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15620667 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15621450 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15627553 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15627773 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15628087 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15629356 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15631310 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15636680 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15644674 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15649154 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15652146 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15652238 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15654283 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15656031 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15658682 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15659179 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15662364 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15662444 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15670918 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15683929 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15687683 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15687888 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15688185 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15689697 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15693938 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15698237 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15699246 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15701886 | Remapped | Perfect | NC_000011.10:g.(?_ 55197899)_(5524187 3_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,197,899 | 55,241,873 |
| nssv15615430 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15616510 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15620667 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15621450 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15627553 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15627773 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15628087 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15629356 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15631310 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15636680 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15644674 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15649154 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15652146 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15652238 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15654283 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15656031 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15658682 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15659179 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15662364 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15662444 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15670918 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15683929 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15687683 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15687888 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15688185 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15689697 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15693938 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15698237 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15699246 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 | ||
| nssv15701886 | Submitted genomic | NC_000011.9:g.(?_5 4965375)_(55009349 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 54,965,375 | 55,009,349 |