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dbVar

Database of genomic structural variation

nsv4384116

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:25,391

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 142 SVs from 34 studies. See in: genome view

Remapped(Score: Perfect):160,825,161-160,850,551

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4384116	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	160,825,161	160,850,551
nsv4384116	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	160,252,168	160,277,558

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15630417	copy number loss	1-0611-003	SNP array	Genotyping	18
nssv15675480	copy number loss	154609	SNP array	Genotyping	24

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15630417	Remapped	Perfect	NC_000005.10:g.(?_ 160825161)_(160850 551_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	160,825,161	160,850,551
nssv15675480	Remapped	Perfect	NC_000005.10:g.(?_ 160825161)_(160850 551_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	160,825,161	160,850,551
nssv15630417	Submitted genomic		NC_000005.9:g.(?_1 60252168)_(1602775 58_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	160,252,168	160,277,558
nssv15675480	Submitted genomic		NC_000005.9:g.(?_1 60252168)_(1602775 58_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	160,252,168	160,277,558

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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