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dbVar

Database of genomic structural variation

nsv4385484

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:50,271

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 630 SVs from 71 studies. See in: genome view

Remapped(Score: Perfect):83,531,592-83,581,862

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4385484	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	83,531,592	83,581,862
nsv4385484	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000013.10	Chr13	84,105,727	84,155,997

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15637382	copy number loss	13-0094-004	SNP array	Genotyping	24
nssv15670248	copy number loss	7-0288-003	SNP array	Genotyping	20
nssv15686274	copy number loss	OCD3-S_896083	SNP array	Genotyping	27
nssv15691244	copy number loss	OCD29-B_OL-1241	SNP array	Genotyping	20
nssv15691283	copy number loss	OCD3-S_896082	SNP array	Genotyping	22
nssv15697945	copy number loss	216640	SNP array	Genotyping	17

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15637382	Remapped	Perfect	NC_000013.11:g.(?_ 83531592)_(8358186 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	83,531,592	83,581,862
nssv15670248	Remapped	Perfect	NC_000013.11:g.(?_ 83531592)_(8358186 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	83,531,592	83,581,862
nssv15686274	Remapped	Perfect	NC_000013.11:g.(?_ 83531592)_(8358186 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	83,531,592	83,581,862
nssv15691244	Remapped	Perfect	NC_000013.11:g.(?_ 83531592)_(8358186 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	83,531,592	83,581,862
nssv15691283	Remapped	Perfect	NC_000013.11:g.(?_ 83531592)_(8358186 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	83,531,592	83,581,862
nssv15697945	Remapped	Perfect	NC_000013.11:g.(?_ 83531592)_(8358186 2_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	83,531,592	83,581,862
nssv15637382	Submitted genomic		NC_000013.10:g.(?_ 84105727)_(8415599 7_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	84,105,727	84,155,997
nssv15670248	Submitted genomic		NC_000013.10:g.(?_ 84105727)_(8415599 7_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	84,105,727	84,155,997
nssv15686274	Submitted genomic		NC_000013.10:g.(?_ 84105727)_(8415599 7_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	84,105,727	84,155,997
nssv15691244	Submitted genomic		NC_000013.10:g.(?_ 84105727)_(8415599 7_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	84,105,727	84,155,997
nssv15691283	Submitted genomic		NC_000013.10:g.(?_ 84105727)_(8415599 7_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	84,105,727	84,155,997
nssv15697945	Submitted genomic		NC_000013.10:g.(?_ 84105727)_(8415599 7_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	84,105,727	84,155,997

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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