nsv4385696

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:19
Validation:Not tested
Clinical Assertions: No
Region Size:49,011

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2212 SVs from 101 studies. See in: genome view

Remapped(Score: Perfect):55,625,819-55,674,829

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4385696	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nsv4385696	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	55,393,295	55,442,305

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15616413	copy number gain	1-0824-003	SNP array	Genotyping	22
nssv15617227	copy number gain	1-0816-003	SNP array	Genotyping	19
nssv15619242	copy number gain	1-0931-005	SNP array	Genotyping	21
nssv15634486	copy number gain	11-0046-003	SNP array	Genotyping	15
nssv15639047	copy number gain	14-0246-002	SNP array	Genotyping	22
nssv15642199	copy number gain	16-1002-002	SNP array	Genotyping	21
nssv15642610	copy number gain	15-1133-002	SNP array	Genotyping	14
nssv15642978	copy number gain	15-1131-002	SNP array	Genotyping	21
nssv15645628	copy number gain	16-1020-002	SNP array	Genotyping	21
nssv15647511	copy number gain	2-0225-001	SNP array	Genotyping	21
nssv15648992	copy number gain	2-1134-003	SNP array	Genotyping	26
nssv15650909	copy number gain	2-1425-004	SNP array	Genotyping	20
nssv15651446	copy number gain	2-1437-001	SNP array	Genotyping	28
nssv15655703	copy number gain	2-1703-003	SNP array	Genotyping	16
nssv15669162	copy number gain	7-0136-003	SNP array	Genotyping	20
nssv15676399	copy number gain	232817S	SNP array	Genotyping	25
nssv15678512	copy number gain	206762	SNP array	Genotyping	15
nssv15685624	copy number gain	OCD168-8961233	SNP array	Genotyping	19
nssv15691007	copy number gain	OCD180-LM-1754	SNP array	Genotyping	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15616413	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15617227	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15619242	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15634486	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15639047	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15642199	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15642610	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15642978	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15645628	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15647511	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15648992	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15650909	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15651446	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15655703	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15669162	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15676399	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15678512	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15685624	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15691007	Remapped	Perfect	NC_000011.10:g.(?_ 55625819)_(5567482 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,625,819	55,674,829
nssv15616413	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15617227	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15619242	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15634486	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15639047	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15642199	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15642610	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15642978	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15645628	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15647511	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15648992	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15650909	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15651446	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15655703	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15669162	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15676399	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15678512	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15685624	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305
nssv15691007	Submitted genomic		NC_000011.9:g.(?_5 5393295)_(55442305 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,393,295	55,442,305

dbVar

Database of genomic structural variation

nsv4385696

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant